PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g001920.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 193aa    MW: 21275.8 Da    PI: 8.754
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g001920.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-192576156
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      ++y+GVr ++ +gr+ AeIrdp++   ++r +lg+f+tae+Aa+a++ a+++++g+
  Sopen12g001920.1 25 PRYRGVRKRP-WGRFSAEIRDPVK---KARKWLGTFDTAEGAARAYDTAARSFHGA 76
                      68********.**********654...5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.84E-302585No hitNo description
PfamPF008473.5E-112575IPR001471AP2/ERF domain
PROSITE profilePS5103223.5382683IPR001471AP2/ERF domain
SMARTSM003809.6E-342689IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-302683IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-212684IPR016177DNA-binding domain
PRINTSPR003675.9E-102738IPR001471AP2/ERF domain
PRINTSPR003675.9E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MPRRKNPEIN GSRSVVFRQS VIDPPRYRGV RKRPWGRFSA EIRDPVKKAR KWLGTFDTAE  60
GAARAYDTAA RSFHGAKAKT NFPILPPYGE NQFENLQQSR PASSSMSSTV ESSSDARALC  120
KTMQPRVEIP RRISMGEGHS DCDSSSSVVD GNCIGGGGGD DDQTSSFCKD PLPFDLNFPP  180
PSDDFQIITP LCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-192790670ATERF1
3gcc_A2e-192790670ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015061421.11e-141ethylene-responsive transcription factor 3-like
TrEMBLA0A0V0HP811e-111A0A0V0HP81_SOLCH; Putative ethylene-responsive transcription factor 7-like
TrEMBLG3K5121e-111G3K512_SOLTU; Ethylene response factor ERF1
STRINGSolyc12g005960.1.11e-112(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14369912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.15e-30ethylene responsive element binding factor 4