PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g001840.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 461aa    MW: 51681.1 Da    PI: 6.8823
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g001840.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.3e-172269148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WTt Ed +l ++vk++G g+W+++ r  g+ R++k+c++rw ++l
  Sopen12g001840.1 22 KGPWTTTEDAILMEYVKKHGEGNWNAVQRNSGLMRCGKSCRLRWANHL 69
                      79******************************************9986 PP
2Myb_DNA-binding49.41.1e-1575118146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +g+++ eE+ l+v+++++lG++ W++ a+ ++ gRt++++k++w++
  Sopen12g001840.1  75 KGAFSLEEERLIVELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 118
                       799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-231672IPR009057Homeodomain-like
PROSITE profilePS5129416.8581769IPR017930Myb domain
SuperFamilySSF466893.74E-2921116IPR009057Homeodomain-like
SMARTSM007171.2E-122171IPR001005SANT/Myb domain
PfamPF002491.1E-142269IPR001005SANT/Myb domain
CDDcd001671.62E-102469No hitNo description
PROSITE profilePS5129425.04270124IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-2473123IPR009057Homeodomain-like
SMARTSM007171.5E-1574122IPR001005SANT/Myb domain
PfamPF002491.6E-1475118IPR001005SANT/Myb domain
CDDcd001673.90E-1177120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MAPSGGGVNK NNGGCTRQVL KKGPWTTTED AILMEYVKKH GEGNWNAVQR NSGLMRCGKS  60
CRLRWANHLR PHLKKGAFSL EEERLIVELH AKLGNKWARM AAQLPGRTDN EIKNYWNTRL  120
KRRQRAGLPI YPQDIQPQNY QQDQNQQHST NIPSPFDNHQ NSNYNNNSPL SLLDIFNPST  180
MKPSRNIIPH QYQFNNNPSS PFLTNTNNIN NQVKFFRDPR VSLSLTLASS MKNSQLSSMV  240
APVPNNFSQR YSSSMPVPPL QHTYPNFTTT TRPYTAISSN PNGLILGMGI EHRSIQSSVP  300
RTTSTSSDHA DNNYAINHGL SRGNSGLLED LLEESHTLTR GEKIEENCPI ESEDNNKGKL  360
VWEEYGLTEE AADAILTEES TYNFSHKHSE DSSSPNSSSG ITTKEASLEN IGNQVDDDIM  420
RFLDNFPLGV PVPDWCDDQQ NTSNGQSFEC DQIQLSSKSS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29201235107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060875.10.0transcription factor MYB101-like
TrEMBLM1B3950.0M1B395_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000360860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.14e-68myb domain protein 101