PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g001780.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 750aa    MW: 82608.7 Da    PI: 5.0098
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g001780.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.31.9e-2177133157
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                       r++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  Sopen12g001780.1  77 RKRYHRHTQHQIQELEAYFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 133
                       789999************************************************995 PP
2START178.34.5e-562734894205
                       HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
             START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                        +a++e+v++a+  ep+W+ s      ++n+de+ + f+++ +     + +ea r+  +v+m+  +lv++l++++  W   +     +a+ ++
  Sopen12g001780.1 273 MAAMDEFVQMAYIHEPLWFPSIenasFMLNEDEYFRVFPRGIGprpigFVTEATRDGSIVIMNKLDLVQILMNVN-HWASIFSgivsRASCVD 364
                       689*******************999899************999********************************.***************** PP

                       EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
             START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                       vis+g      g++q++ ae+q+ sp vp R+f+f+Ry++   +g+w+ivdvS+d+ +  p      R++++pSg+lie+ +ng skvtwveh
  Sopen12g001780.1 365 VISTGgagnpnGVIQVILAETQVASPQVPtREFYFARYCKLRVDGTWAIVDVSLDQLRAGPA----LRSRKRPSGCLIEDAPNGCSKVTWVEH 453
                       *************************************************************5....*************************** PP

                       EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
             START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                       v+++++++h ++++lv+sgla+gak+w+a+l+rqc 
  Sopen12g001780.1 454 VEVDASTVHTIYKPLVSSGLAFGAKRWLAALDRQCD 489
                       **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-2261132IPR009057Homeodomain-like
SuperFamilySSF466892.38E-2062134IPR009057Homeodomain-like
PROSITE profilePS5007117.60574134IPR001356Homeobox domain
SMARTSM003893.6E-2175138IPR001356Homeobox domain
CDDcd000863.32E-2076134No hitNo description
PfamPF000465.3E-1977132IPR001356Homeobox domain
PROSITE patternPS000270109132IPR017970Homeobox, conserved site
PROSITE profilePS5084838.815261493IPR002913START domain
SuperFamilySSF559611.19E-25263492No hitNo description
CDDcd088751.12E-107265488No hitNo description
SMARTSM002341.0E-53270490IPR002913START domain
PfamPF018525.2E-48273489IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-5357484IPR023393START-like domain
SuperFamilySSF559617.91E-16519742No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MPAVHSRPAN LTPPLVENDG TDDTEISLGQ PSNMMDNQPN SMENVTNTLD TSIGQDLGGG  60
DDHNDDQEEG ETATGKRKRY HRHTQHQIQE LEAYFKECPH PDDKQRKELS RELGLEPLQV  120
KFWFQNKRTQ MKNQLERHEN THLRIEIERM KSEMLRLKEA LGNLSCPTCG GHRINIGDLS  180
FEERQLRNEN ARLKEEIERI SSMAGRVVGK SVFPNNNNGY NSAPPVDFGV LPAYSMPQRV  240
DGNGGFEDVP IMSSMIIPPI SEIEKPFIIE LVMAAMDEFV QMAYIHEPLW FPSIENASFM  300
LNEDEYFRVF PRGIGPRPIG FVTEATRDGS IVIMNKLDLV QILMNVNHWA SIFSGIVSRA  360
SCVDVISTGG AGNPNGVIQV ILAETQVASP QVPTREFYFA RYCKLRVDGT WAIVDVSLDQ  420
LRAGPALRSR KRPSGCLIED APNGCSKVTW VEHVEVDAST VHTIYKPLVS SGLAFGAKRW  480
LAALDRQCDR IASVMVTPTP NNDDMLLTTE ESRKSVLKLA ERMINIFSSG VSATVGNQWT  540
TVSAGNGTDE NVRIMTRKTV GDPSRPPGIV LSAATSFWLP IAPKTVFDYL RNENTRIEWD  600
ILSNGSPLQE IAQIANGTQT GNCVSLLRMI GENDNQSHIV ILQESSTDPT GSYVIYAPVE  660
ICTMNTILNG GDPESVSLLP SGFAILPDGP PGVRGTYNHG SGGSLLTVAF QIMVEFVPVA  720
NISLGSVATV NNLIACTIER IKAALLPQPT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060726.10.0homeobox-leucine zipper protein HDG2-like
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBLA0A3Q7J2020.0A0A3Q7J202_SOLLC; Uncharacterized protein
STRINGSolyc12g005830.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  3. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]