PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen12g001390.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

DBB

Protein Properties

Length: 282aa MW: 30644.5 Da PI: 6.732

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen12g001390.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16	2.5e-05	4	46	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e e++ C ++ lC C ++ H H++v Sopen12g001390.1 4 QCNACEVAEAKVLCCADEAALCWYCDDKVHAAnklankHQRVA 46 7****99*******************6678888888775 PP
2	zf-B_box	26.8	1.1e-08	53	86	2	35
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35 ++kC+ ++e +fC +++ llC++C ++H Sopen12g001390.1 53 PMPKCDICQETVGFFFCLEDRALLCRKCDISIHT 86 689*****9999*****************3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.755	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.78E-4	3	47	No hit	No description
SMART	SM00336	1.5E-6	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.987	52	99	IPR000315	B-box-type zinc finger
SMART	SM00336	7.3E-15	52	99	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.1E-6	53	95	IPR000315	B-box-type zinc finger
CDD	cd00021	1.62E-8	55	99	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MKIQCNACEV AEAKVLCCAD EAALCWYCDD KVHAANKLAN KHQRVALSAS SSPMPKCDIC 60 QETVGFFFCL EDRALLCRKC DISIHTVNAY VSSHQRFLLT GVKVGLEPLG PCASASSRKS 120 HEQRSPPIPK ITPPSQGVLP VHTSGNGNFA PSRLPIVGNI PQCQFDQYLG IGDFNQNYGY 180 MDYGQTKAGN GKLGESASSA FLRDADAEVA GDECFSTEVP DTCWAVPQIP SSPTASRLNW 240 PTRSIQNPFD AALLESDASY FPLQNIQDQQ SNGSGSKRSR RF

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269\|PubMed:18182030, ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:18796637, ECO:0000269\|PubMed:21070414, ECO:0000269\|PubMed:21427283}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:18182030}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	0.0	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015060908.1	0.0	B-box zinc finger protein 22-like
Swissprot	Q9SYM2	2e-77	BBX22_ARATH; B-box zinc finger protein 22
TrEMBL	A0A3Q7JR20	0.0	A0A3Q7JR20_SOLLC; Uncharacterized protein
STRING	Solyc12g005420.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2892	23	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	9e-80	light-regulated zinc finger protein 1