PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen12g001320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 558aa MW: 62502.8 Da PI: 5.4965 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 414.2 | 1.2e-126 | 188 | 557 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lL++cA+a+++++l + l+a+ + +s +gdp+qRl ay++e+L ar s++++y++l+++e + ++ ++++ +++e++P+lkf Sopen12g001320.1 188 LKQLLIACARALAENKLDDFEILVAKARSVVSVTGDPIQRLGAYIVEGLVARKELSGTTIYRSLKCKEPA---GKDLFSYMYILYEICPYLKF 277 689***************************************************9**************9...99999999************ PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 ++++aN aI+ea +e+r+HiiDf++ qG+QW++LlqaLa+Rp+g+p +RiTg+++p s+ + + l ++++rL+ + ee+++ +ef++ v Sopen12g001320.1 278 GYMAANGAIVEACRNEDRIHIIDFQMAQGTQWMTLLQALAARPGGAPYVRITGIDDPVSQyaRGDGLAAVARRLSAISEEFNIAVEFHA-VPV 369 *********************************************************999999**************************.688 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 +++ ++L+v+pgEalaVn+ lqlh+++desv+++++rd +++++kslsPk+v++veqe+++n+++Fl rf+eal+yy a+f+s++++l r Sopen12g001320.1 370 FAPEITWDMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLIRMIKSLSPKIVTLVEQESNTNTAPFLPRFVEALDYYHAMFESIDVTLQR 462 89999**************************************************************************************** PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 + +eri+vE+++l+r+ivnvvaceg+er+erhe l+kW++r+++aGF+++pls+++++ +k l+++++ + y++ e++g+++lgWk+r+Lvs+ Sopen12g001320.1 463 DMKERINVEQHCLARDIVNVVACEGKERVERHELLGKWKSRFMMAGFQQYPLSSYVNSVIKDLMKRYS-EHYTLVEKDGAMLLGWKERNLVSA 554 ********************************************************************.55********************** PP GRAS 371 SaW 373 SaW Sopen12g001320.1 555 SAW 557 *** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.966 | 162 | 539 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.1E-124 | 188 | 557 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MDSHHLVAYG VTGSDLSYSS YPTVSPLENR PFGTSKFESG NSPLVNYFNS ETFNTVSDYQ 60 EQPSCTENLS GASSSSGSSL DYNQYFHRPS PSEDHLPEAP YSRNMKHTLL QLESALMGPD 120 EEAMKSSPYI GENMGAQTSG QRYKAWNKEA QVVRHQQSVV SILNGIQSDK RDNVMEDLPL 180 QGVPSSNLKQ LLIACARALA ENKLDDFEIL VAKARSVVSV TGDPIQRLGA YIVEGLVARK 240 ELSGTTIYRS LKCKEPAGKD LFSYMYILYE ICPYLKFGYM AANGAIVEAC RNEDRIHIID 300 FQMAQGTQWM TLLQALAARP GGAPYVRITG IDDPVSQYAR GDGLAAVARR LSAISEEFNI 360 AVEFHAVPVF APEITWDMLD VRPGEALAVN FPLQLHHTPD ESVDVNNPRD GLIRMIKSLS 420 PKIVTLVEQE SNTNTAPFLP RFVEALDYYH AMFESIDVTL QRDMKERINV EQHCLARDIV 480 NVVACEGKER VERHELLGKW KSRFMMAGFQ QYPLSSYVNS VIKDLMKRYS EHYTLVEKDG 540 AMLLGWKERN LVSASAWF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-63 | 185 | 557 | 1 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015059336.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q69VG1 | 0.0 | CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1 | ||||
TrEMBL | G8Z267 | 0.0 | G8Z267_SOLLC; Hop-interacting protein THI039 | ||||
STRING | Solyc12g005340.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3441 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 1e-173 | GRAS family protein |
Publications ? help Back to Top | |||
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