PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen11g030460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WOX | ||||||||
Protein Properties | Length: 208aa MW: 23847.3 Da PI: 8.9314 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.2 | 1.6e-19 | 3 | 64 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r +R+++t+eql Lee+++k r+p+a++++ ++ +l +++ ++V++WFqN++a++++ Sopen11g030460.1 3 RPTRWSPTPEQLMFLEEMYRKgLRNPNATQIQSITCHLssfgKIEGKNVFYWFQNHKARDRQ 64 569*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 111.5 | 4.4e-36 | 5 | 65 | 4 | 64 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 tRW+PtpeQ++ Lee+y++Glr+Pn+ +iq it +L+++Gkie+kNVfyWFQN+kaR+rqk Sopen11g030460.1 5 TRWSPTPEQLMFLEEMYRKGLRNPNATQIQSITCHLSSFGKIEGKNVFYWFQNHKARDRQK 65 8***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.333 | 1 | 65 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.5E-5 | 2 | 69 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.44E-11 | 3 | 69 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.3E-17 | 3 | 64 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.58E-4 | 3 | 65 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-6 | 6 | 64 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MGRPTRWSPT PEQLMFLEEM YRKGLRNPNA TQIQSITCHL SSFGKIEGKN VFYWFQNHKA 60 RDRQKLKKKL LAQMNQQQIL AQYPIDAHST TTTTNSNNNT LFHCPTTDQY QICPLTSTTA 120 LLQEGGIKEA SSQVMTYLYP MDLSKPADQN MENCMIRPYG KDWIVMMNIN PNNSPYCLNR 180 PLKTLPLFPI TTTDDLKDQT TSSTSLSL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015057299.1 | 1e-156 | WUSCHEL-related homeobox 3-like | ||||
TrEMBL | A0A3Q7J211 | 1e-140 | A0A3Q7J211_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g072790.1.1 | 1e-141 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2959 | 19 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 1e-39 | WOX family protein |