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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopen11g030250.2 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
AP2 |
Protein Properties |
Length: 484aa MW: 53518.7 Da PI: 7.1418 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen11g030250.2 | genome | spenn | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 53.5 | 6.1e-17 | 162 | 211 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Sopen11g030250.2 162 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 211
78*******************......55************************997 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 484 aa
Download sequence Send
to blast |
MMLDLNLSAI YDGKHSLADE SGSSNSSARN VEASSSAGDD ETCSTRAAAA GDMFAFNFDI 60 LKVGGGGGGG GETRRSCSNN DDEEGYDENR SDFVTQQLFP MDNNAELNRT HTSRRPDWVD 120 PSVDPPNTVS FREVQQMGRL QQQQQQQQPV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI 180 WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADINFNL SDYEEDMKQM KNLSKEEFVH 240 VLRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY DKAAIKCNGR EAVTNFEPST 300 YEGEINSNPQ SEGTQQDLDL NLGIATSSPK EIERSSSFQY HPYDMQEASK SQMDKSGSPI 360 VGSSHYKALP AVTSEQAHLW NGAYSNLIPN YEERVSGKRI DVGTSHGHPN WAMQMHSQVG 420 TTPMSMFSAA ASSGFSTPAT TASASQMSGP NNPNTLNLSF ASYSSPSTNT TQYYYQIRPQ 480 LPPP
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HQ586953 | 0.0 | HQ586953.1 Solanum lycopersicum AP2 transcription factor SlAP2d mRNA, complete cds. |