PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g030110.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 189aa    MW: 20611.5 Da    PI: 6.9839
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g030110.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.21.2e-42361351100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ l+a+
  Sopen11g030110.1  36 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPVYGCAGSICQLQKQVSDLQAQ 128
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  Sopen11g030110.1 129 LAKAQAE 135
                       ***9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.17235136IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-4236133IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MESTISSSSS RSVSPSSSSS PNSPPPRSVT VVVVSPCAAC KILRRRCAEK CVLAPYFPPN  60
DPIKFTTAHR VFGASNIIKF LQELPESQRA DAVSSMVYEA NARLRDPVYG CAGSICQLQK  120
QVSDLQAQLA KAQAEIVNMQ CQQANLMALI CMEMGQSNPQ PISPPQQSLE NFPLSYLDDN  180
IGSWETLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-433514310118LOB family transfactor Ramosa2.1
5ly0_B6e-433514310118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057811.11e-137LOB domain-containing protein 1
SwissprotQ9LQR02e-72LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A3Q7J1V11e-115A0A3Q7J1V1_SOLLC; Uncharacterized protein
STRINGSolyc11g072470.1.11e-116(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-68LOB domain-containing protein 1