PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g029800.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YC
Protein Properties Length: 301aa    MW: 33074.6 Da    PI: 4.6338
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g029800.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC59.95.5e-196861898
             NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                      ++++P arikki++adedv +i+  +P l+ska elf+ +l  r++  + ++  +t++   ++ ++++ ++fdfl d+v r
  Sopen11g029800.1  6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKKGAKTMNSFHLKHCIQSFNVFDFLKDVVSR 86
                      5789**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.02E-20388IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.6E-25372IPR009072Histone-fold
PfamPF008089.9E-18871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MRKRLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEITLKKGAK  60
TMNSFHLKHC IQSFNVFDFL KDVVSRVPDL GGSDAGAESA TKRRKVAEED DHDSDDDTKR  120
NHANETANNS GTGRGRGRGR GRGRGRGARA VEKGDYHAHS EKLEDPAADV SYQKDDENQK  180
QNDERMVDYV AESAVDSKNI SAAKCSPEVV APARNFDLNI DLNESVESTP MPSEVPLSST  240
AIPTATPAPA PAPAPAPDEL KHEEIPGWSL SEMEKMAIDP IQLANLNQGL DEEEEDYDEE  300
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A9e-22272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135145RGRGRGRGRGR
2137146RGRGRGRGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057096.10.0dr1-associated corepressor
TrEMBLM1CM701e-163M1CM70_SOLTU; Uncharacterized protein
STRINGSolyc11g072150.1.11e-171(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.12e-56NF-YC family protein