PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen11g029710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 474aa MW: 52620.8 Da PI: 6.0832 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.4 | 7.6e-14 | 29 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W + Ed +l d+v+++G g+W+++ r+ g+ R++k+c++rw ++l Sopen11g029710.1 29 KGPWLKAEDAILRDYVAEYGEGNWSSVHRRTGLARCGKSCRLRWANHL 76 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.7e-17 | 82 | 125 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE++l+v ++q G++ W++Ia++++ gRt++++k++w++ Sopen11g029710.1 82 KGAFTQEEEQLIVAMHAQIGNK-WARIASEFP-GRTDNDIKNFWNT 125 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.418 | 24 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-27 | 26 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-11 | 28 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-12 | 29 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 30 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.12E-9 | 31 | 76 | No hit | No description |
PROSITE profile | PS51294 | 24.35 | 77 | 131 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-16 | 81 | 129 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-15 | 82 | 125 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.50E-11 | 84 | 127 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 84 | 130 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 474 aa Download sequence Send to blast |
MTSEVGMNST SVEEANAGGN IRRGTPLKKG PWLKAEDAIL RDYVAEYGEG NWSSVHRRTG 60 LARCGKSCRL RWANHLKPYL KKGAFTQEEE QLIVAMHAQI GNKWARIASE FPGRTDNDIK 120 NFWNTRLKRQ RREEKYMLSP GVFFREFSED KQNKELATSS SANSLPHLLP INNVEIPTAE 180 NRNFEPSQQL YPPRLLNNGF SSFLGTPATS LRDQGLNSSW NTHSVPSTVH SSKRTQGLES 240 WFSNRNVDLS QAHHQYQNDG SFFTQSLGFS SLHTHNLTSN YHPSSASEIP GIQASSSEHR 300 LKGKLELPSF QTPMTSWDSA SSVPSIESSS TFIQSPPNEY TDSCSLSPQS SDLLHAILYG 360 SQTPKASSSN SYQETSRDVV PDSCPVLRQI QWGTDPDAIT PSGHAITSVF SEYTPSSGGS 420 LEDHQSIAPL IGCNVNQEMA NFTPTAGNND TSNDDLFSET DMYFSPSDWL HDLE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-27 | 27 | 130 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015057287.1 | 0.0 | transcription factor GAMYB-like isoform X1 | ||||
TrEMBL | A0A3Q7J0M0 | 0.0 | A0A3Q7J0M0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g072060.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2021 | 23 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G26930.1 | 1e-56 | myb domain protein 97 |