PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g029190.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 652aa    MW: 69158.9 Da    PI: 6.2038
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g029190.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.6e-081256447
                      S-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  4 WTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47
                      WT+eEd+ + +a +++ g+   + +Ia+ ++ g++l +++++++ +
  Sopen11g029190.1 12 WTKEEDKAFENALALFSGDsdKFLKIAAAVP-GKSLQEIIDHYNVL 56
                      *******************************.***********976 PP
2Myb_DNA-binding40.18.2e-1398142347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+  ++++ +++G+g+W+ I+r +   Rt+ q+ s+ qky
  Sopen11g029190.1  98 PWTEEEHRSFLQGLAKHGKGDWRGISRNFVFSRTPTQVASHAQKY 142
                       8*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.49161IPR017884SANT domain
SMARTSM007174.2E-6859IPR001005SANT/Myb domain
SuperFamilySSF466893.8E-91264IPR009057Homeodomain-like
CDDcd001676.23E-71257No hitNo description
PfamPF002491.8E-51256IPR001005SANT/Myb domain
PROSITE profilePS5129417.45591147IPR017930Myb domain
SuperFamilySSF466899.33E-1693147IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-1595145IPR006447Myb domain, plants
SMARTSM007171.0E-1195145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-1195142IPR009057Homeodomain-like
CDDcd001671.58E-998142No hitNo description
PfamPF002492.4E-1198142IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MSLNRTCNSS FWTKEEDKAF ENALALFSGD SDKFLKIAAA VPGKSLQEII DHYNVLVEDI  60
TDIESGKVPL PKYERMRSSS SRRRRSSGAG VERRKGVPWT EEEHRSFLQG LAKHGKGDWR  120
GISRNFVFSR TPTQVASHAQ KYYSRLNGNN AKRRNSIHDV SSVGAANITE PSQGQKSDEL  180
TGPCGGHSQW PIADYVTEAF ETGMPSLPGP VTNCTTDAFE GPSAVNPEKF PLGASSGSDL  240
NSSFPRVDEF LQSVEDLVIL PAEGTSGVCH EVDSRTSPSL SMQPSVTGGT GMYTHPVSFP  300
DVHEFLQGVE NLITVPGEGP SGANRGINTR ISPSLSLQSS VAGGTRMYSR SVTVPAEGTS  360
GVRCGIDTRT SPSLSLQPSV AGGTRMYPHP VNVPAEGTSG VSHGVDTRTS PSLSLQPSVV  420
GGTRMYPHPV NVSAEGISGA SHGVDTRTSP ILNLQPSVVG GTGIYTDPII VPAEGTSGAR  480
RGVDTRTSPS LSLQPSVGGC TGMYTHPVTI LAEITSGVRC GVDTRTSPSL GLQPSYTHAV  540
NNVRYDLEEL MTKQLVGASQ VGPTINTASL PSPIADHIGV RGCTTSSSVA RNDFASTMEA  600
PGEGFSVDSM QMPSIPGHIG GGTYPCWEPS SKEDSIFDLE DLYTDHMFGF HK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1312841188RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015059145.10.0galactose-specific cell agglutination protein gsf2-like isoform X1
RefseqXP_015059146.10.0galactose-specific cell agglutination protein gsf2-like isoform X2
TrEMBLQ94GD40.0Q94GD4_SOLDE; Putative I-box binding factor, identical
STRINGSolyc11g071500.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139501113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-53MYB family protein