PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g028980.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 999aa    MW: 110907 Da    PI: 4.6486
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g028980.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66e-184892348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       WT+eEde+l +av+q+ g++Wk+Ia+++   R++ qc +rwqk+l
  Sopen11g028980.2 48 HWTPEEDEILRQAVQQFKGKSWKKIAECFK-DRSDVQCLHRWQKVL 92
                      6****************************9.************986 PP
2Myb_DNA-binding54.82.2e-1798144148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+W++eEd++l+ +v+ +G++ W+tIa+++  gR +kqc++rw+++l
  Sopen11g028980.2  98 KGSWSKEEDDKLIGLVNIHGPKKWSTIAQELA-GRIGKQCRERWHNHL 144
                       799*****************************.*************97 PP
3Myb_DNA-binding51.72.1e-16150192145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       + +WT+eE++ l++a++ +G++ W+  +++++ gRt++ +k++w+
  Sopen11g028980.2 150 KEAWTQEEELTLIRAHEAHGNK-WAELSKYLP-GRTDNAIKNHWH 192
                       579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.09E-154198IPR009057Homeodomain-like
PROSITE profilePS5129418.3654192IPR017930Myb domain
SMARTSM007171.2E-144594IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-194898IPR009057Homeodomain-like
PfamPF002492.3E-154892IPR001005SANT/Myb domain
CDDcd001678.16E-144992No hitNo description
PROSITE profilePS5129429.63393148IPR017930Myb domain
SuperFamilySSF466895.62E-3095191IPR009057Homeodomain-like
SMARTSM007173.7E-1697146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2599147IPR009057Homeodomain-like
CDDcd001671.78E-14100144No hitNo description
PfamPF139211.6E-16101159No hitNo description
Gene3DG3DSA:1.10.10.602.5E-21148198IPR009057Homeodomain-like
PROSITE profilePS5129421.038149199IPR017930Myb domain
SMARTSM007178.9E-16149197IPR001005SANT/Myb domain
CDDcd001676.64E-12152192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 999 aa     Download sequence    Send to blast
MDYQDLPLSQ ATMESDETSN TPSDDISSLQ SSRPLHGRTS GPKRRSSHWT PEEDEILRQA  60
VQQFKGKSWK KIAECFKDRS DVQCLHRWQK VLDPELVKGS WSKEEDDKLI GLVNIHGPKK  120
WSTIAQELAG RIGKQCRERW HNHLNPAIKK EAWTQEEELT LIRAHEAHGN KWAELSKYLP  180
GRTDNAIKNH WHSSVKKKRD SYIASGLLAQ LPTLSNVNHQ NQSIPSSSVM LQQTSEDESV  240
HKEGAELEEV MECSQRSTLA GCPQSTSDLG NTFVHKRENG GMSMEIVREK DTSSSAAPCP  300
TYYTPAFEDV ACSMQEVPSE LVDSNSLEQH TFSHDWGNST GNDWQFNMDD FTEFIQESSG  360
HYMQCLNGNE NHDMVTNPLQ NAMESGATSN AGNIVEGPYN LNEMFNLNEL FDGSRIEYPE  420
VGIPQCSLPE TGVNGSGEPA DSLIYQSSNN QIPESGNMAP QNCNDFEAST YQQFSVPSHF  480
SSEDRSLVFG IASDQFNYPP LENPVQESFS SRCDGFICPS EFGSPSNDNG IDNAVLKDHP  540
DYTKDSSRLE EQKDEGALCY DPPRFPSLDT PFLYCDLKQS GSDTQQEYSP LGIRQLMTTS  600
TDCSTPLRLW DSPLRADSPD AILKSAAKTF TGTPSILKKR QRHLVTPLSE KRWEKKLESD  660
LNQESFSNMV TEFPRVDDMF DESANEKAST EDKENLHPSS GGGRKETGDG VTGLSCIENS  720
ERQLDGGGAH YHKEPHSEYA GANDAMVKVK QPPGVLVEIS TNDMLFSPDR FFTKHDRATS  780
LSIKALGNQY ARRLEAASSN QATVSSSSIV CSPDVLGKSQ SGASMQYTTS TALENTTENS  840
ENVFGADPSN IFGETPFKIS IESPSAWKSP WFTDPLLSSP RYEKELTYEE FAFLLSPGDR  900
SYDAIGLMKQ LSEQTAPSIA DARQILGSET PETILLGRNS KEQKADENRT LLASNAMSER  960
RTLDFSECGT PGKGNETTTK FGSNDNVSSP SSYLLKCCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-63471987158MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-63471987158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015056676.10.0transcription factor MYB3R-1-like isoform X2
TrEMBLA0A3Q7J1B30.0A0A3Q7J1B3_SOLLC; Uncharacterized protein
STRINGSolyc11g071300.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.11e-166myb domain protein 3r-4