PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen11g028210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ARF | ||||||||
Protein Properties | Length: 699aa MW: 76893.1 Da PI: 8.1284 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.8 | 5.6e-25 | 113 | 214 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f k+lt+sd+++ g +++p+ +ae++ ++ + t+t +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF + Sopen11g028210.1 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVTAKDVHGETWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFL--R 201 89****************************997656555..8************************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++el+v+++r+ Sopen11g028210.1 202 AENGELCVGIRRA 214 49999******97 PP | |||||||
2 | Auxin_resp | 115.8 | 3.9e-38 | 273 | 356 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa as++++FevvY+Pra t+eF+v++++v++a++++++ GmRfkmafetedss++++ +Gt+++++ +dp+rWpnS+Wr+L+ Sopen11g028210.1 273 AAYLASSGQPFEVVYYPRANTPEFCVRASSVNAAMRIQWCSGMRFKMAFETEDSSRISWfMGTISSIQLADPIRWPNSPWRLLQ 356 67789*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-38 | 105 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-29 | 109 | 214 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.49E-23 | 112 | 213 | No hit | No description |
PROSITE profile | PS50863 | 13.493 | 113 | 215 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.3E-24 | 113 | 215 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-23 | 113 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.0E-33 | 273 | 356 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 18.225 | 588 | 668 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009743 | Biological Process | response to carbohydrate | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048589 | Biological Process | developmental growth | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 699 aa Download sequence Send to blast |
MKEILEKCVD SQLWHACAGG MVQIPPVNSK VYYFAQGHAE HTLMNVDFSA LPGSPALILC 60 RVAAVKFLAD PETDEVYAKI RVVPVGNKGN DFDDDDDILG SNESGTAEKP NSFAKTLTQS 120 DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVTAKDVHG ETWKFRHIYR GTPRRHLLTT 180 GWSSFVNQKK LVAGDSIVFL RAENGELCVG IRRAKRGGIG GPEAPSGWNS GAGNYGGFSA 240 FLREEMSKNG NLTSPTRSLR GKGRVRPESV VEAAYLASSG QPFEVVYYPR ANTPEFCVRA 300 SSVNAAMRIQ WCSGMRFKMA FETEDSSRIS WFMGTISSIQ LADPIRWPNS PWRLLQVAWD 360 EPDLLQNVKH VSPWLVELVS NMPVIHLSPF SPPRKKLRLP PDFSLDSQFQ LPSFSGNPLR 420 SSSPFCCLSD NITAGIQGAR HAQFGVPLLD LHLSNKLPSG LLPPSFQRVA ANSQLPNVIN 480 KCQNDRNDNI SCLLTMGTSS KTLDKNDSVN TPRFLLFGQP ILTEQQISNG CSVSAPQVVQ 540 TGKDLGRIQP INEKHPSEQK GSIQDNLSSA TFFWNRGYHA AELGVLNTGH CKVFLESEDV 600 GRTLDLSVMG SYEELYKRLA NMFGLERPDM LTRVLYHDAT GAVKHTGDEP FSDFVKSAKR 660 LTILMNSSSN IKRKWLTGLA TAERGLDSSN QAGPLSIFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 4e-82 | 9 | 377 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF911788 | 0.0 | JF911788.1 Solanum lycopersicum cultivar MP1 auxin response factor 10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015058989.1 | 0.0 | auxin response factor 18 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A3Q7IZS5 | 0.0 | A0A3Q7IZS5_SOLLC; Auxin response factor | ||||
STRING | Solyc11g069500.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA592 | 24 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |
Publications ? help Back to Top | |||
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