PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen11g027930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ARF | ||||||||
Protein Properties | Length: 809aa MW: 90189.7 Da PI: 6.0652 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74 | 1.8e-23 | 174 | 275 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + Sopen11g027930.1 174 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKEQ-RPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RG 263 99****************************86333.45679************************************************..44 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++ l+++++r+ Sopen11g027930.1 264 EGGDLRLGIRRA 275 89999**99986 PP | |||||||
2 | Auxin_resp | 119.5 | 2.7e-39 | 300 | 381 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+s ks+F+v+Y+Pras+++Fvv+++k++ka+++++ vG+Rfkm+f+ +ds+err+sG+v+g+sd+dp+rWpnSkWr+L Sopen11g027930.1 300 VATALSAKSTFHVFYSPRASHADFVVPYQKYVKAINSRIPVGTRFKMKFDLDDSPERRYSGVVTGISDMDPFRWPNSKWRCL 381 6899*****************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.19E-44 | 166 | 290 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-40 | 167 | 287 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.67E-22 | 172 | 274 | No hit | No description |
PROSITE profile | PS50863 | 12.901 | 174 | 276 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-21 | 174 | 275 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-23 | 174 | 276 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.4E-33 | 301 | 381 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 4.12E-11 | 674 | 760 | No hit | No description |
PROSITE profile | PS51745 | 21.663 | 681 | 765 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 809 aa Download sequence Send to blast |
MEIDLNHALV SEVEKNVCCN EECDKGGGGG CVNCSLYTST SSCSSNVSYS SLAVTSIYKE 60 LWHACAGPLT SLPKKGNVVV YFPQGHMEEA VSAFPFSPVK IDLPTFGLQP QIFCRVEDVQ 120 LLANKENDEV YTQLTLLPLP ESMAISLEGK EHEDSGTDEE GNGVNPGKSA SHMFCKTLTA 180 SDTSTHGGFS VPRRAAEDCF PPLDYKEQRP SQELIAKDLH GVEWKFRHIY RGQPRRHLLT 240 TGWSIFVSQK NLVSGDAVLF LRGEGGDLRL GIRRAARPRN GLPESIIKSQ YSGPDVLSSV 300 ATALSAKSTF HVFYSPRASH ADFVVPYQKY VKAINSRIPV GTRFKMKFDL DDSPERRYSG 360 VVTGISDMDP FRWPNSKWRC LMVRWDEDIM SNHQERVSPW EIDSSVSLPP LSIQSSPRLK 420 KLRTSQQAPS VLDSHFAGGS ALLDFEESIR SSKVLQGQEN LGLISPPYGC DKPVRPLDFE 480 LQRVARHNLM PNGVENIIVG DFVKTQPPTT YTGFLESNRF PKVLQGQEIC SLRSLTGKGD 540 VNFGAWGKPE FGCNVFGTYQ RPRANFYPLA SEGARNVFLP YNAMYRAGQD PVVPSYITNF 600 QRENPTLNQN SIQNVVRREE AGMPKFVNEQ RPPEMSKVSI PENHFKNEND DSFNAQAPCK 660 LFGFSLTKEP STPSSQSSGK RSCTKVHKQG SLVGRAIDLS RLNGYDDLLV ELERLFNMED 720 LLRDPNKGWR ILYTDSENDM MVVGDDPWHE FCEVVSKIHI YTQEEVEKMT IEGISDDTQS 780 CLEEAPAIMD VSKSSSVGQP DSSPTVIRI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-114 | 56 | 403 | 18 | 353 | Auxin response factor 1 |
4ldw_A | 1e-114 | 56 | 403 | 18 | 353 | Auxin response factor 1 |
4ldw_B | 1e-114 | 56 | 403 | 18 | 353 | Auxin response factor 1 |
4ldx_A | 1e-114 | 56 | 403 | 18 | 353 | Auxin response factor 1 |
4ldx_B | 1e-114 | 56 | 403 | 18 | 353 | Auxin response factor 1 |
4ldy_A | 1e-114 | 56 | 403 | 18 | 353 | Auxin response factor 1 |
4ldy_B | 1e-114 | 56 | 403 | 18 | 353 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ340259 | 0.0 | DQ340259.1 Lycopersicon esculentum auxin response factor 4 (ARF4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015058398.1 | 0.0 | auxin response factor 4 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | Q2LAI9 | 0.0 | Q2LAI9_SOLLC; Auxin response factor | ||||
STRING | Solyc11g069190.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5143 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |