PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g027740.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 310aa    MW: 35048.1 Da    PI: 8.298
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g027740.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W++eEd +l+d ++++G+  +W + +++ g++R++k+c++rw++yl
  Sopen11g027740.1 14 RGPWSPEEDAKLKDFIHKFGTAgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                      89******************99*************************97 PP
2Myb_DNA-binding36.11.5e-1169111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g ++ +Ed  + ++ +  G++ W+ Ia+ ++ gRt++++k++w++
  Sopen11g027740.1  69 GDFSDDEDRVICNLYANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                       679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.036962IPR017930Myb domain
SuperFamilySSF466897.35E-2611109IPR009057Homeodomain-like
SMARTSM007171.7E-111364IPR001005SANT/Myb domain
PfamPF002491.9E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-231569IPR009057Homeodomain-like
CDDcd001672.27E-91662No hitNo description
PROSITE profilePS5129421.57563117IPR017930Myb domain
SMARTSM007173.4E-1067115IPR001005SANT/Myb domain
PfamPF002494.4E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2370117IPR009057Homeodomain-like
CDDcd001672.68E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKDFIH KFGTAGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGD FSDDEDRVIC NLYANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGL  120
IIPNNNSSSY NNNNYQKKLP YFPSTSLHQA QQNLGPFITG PEQPIIIPSA QQNNLFTNNN  180
NNLMMIANNL QNYPNFGATN YNLQNYPNFG EVASCSSSDG SQMSFGTNKD IINIKREEIM  240
SFGHHDGAIY EEINNQQFNF GYFGNTMQEI ATSCCTNGNS GSTTNSSNNF LLYNNDENCN  300
KSNEIGMFYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4261740.0AF426174.1 Lycopersicon esculentum blind mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057979.10.0transcription factor RAX2-like
TrEMBLQ8W1R80.0Q8W1R8_SOLLC; Blind
STRINGSolyc11g069030.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-75myb domain protein 36