PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g025950.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 354aa    MW: 40429.9 Da    PI: 9.7051
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g025950.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like35.12.8e-11142193255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        +++Wt+eL ++  e+v++LG  +kA Pk++l+ m  ++Lt+  v   L kYR+
  Sopen11g025950.1 142 RKMKWTTELDKKLEEVVRELG--DKAGPKNVLKRMREPDLTVGCVTYRLKKYRS 193
                       68******************4..89****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-10139197IPR009057Homeodomain-like
PfamPF002491.1E-5143191IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSPEVTMKML KEAPSQGICF IYKKSLISSL KLRNVWKHVK WHNKKANEKS QHYNANPIHV  60
SDNASCPTKI QDIKGKSIVN SSETYQDQDV GSLLEKAEAK RSKRIRSTDE DAQAKRSGPS  120
EKEDDHSLLS RKSTERPEKK RRKMKWTTEL DKKLEEVVRE LGDKAGPKNV LKRMREPDLT  180
VGCVTYRLKK YRSQKKQAPN VEAITSNEEQ HSNVVNSSNL SMDVNELFQG ADIPQPPEVP  240
LASSSDYSLN ECADWINEFL QLEDCELKLP PLHLPYLRGE SASGKVDTTL VDRELKLQLL  300
KHHLHRVQLR MKQQADSHRN FSLSSYSSSL LTVYSRNPET VLRSSNSLRI PAIE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137143EKKRRKM
2138142KKRRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164911.11e-146PREDICTED: two-component response regulator ORR30-like
TrEMBLM1D9L21e-135M1D9L2_SOLTU; Uncharacterized protein
STRINGSolyc11g066170.1.11e-180(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4899714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.44e-10G2-like family protein