PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen11g024510.2

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

SRS

Protein Properties

Length: 341aa MW: 36621 Da PI: 8.3333

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen11g024510.2	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	213	7.2e-66	137	293	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskkqsalsstkl 91 +++CqdCGnqakkdC+h+RCRtCCksrg+dC+thvkstWvpa++rrerq + a+++++++ a +++++k++r +s++++++s+t++ Sopen11g024510.2 137 STTCQDCGNQAKKDCTHRRCRTCCKSRGYDCNTHVKSTWVPASRRRERQLMGASTTTNRNVVAagsssqSTSSAKKPRLVNSQTTTTASHTST 229 679*******************************************999999888776655666666777888999999999999** PP DUF702 92 ssaeskkeletss.lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s+++++++++tss +v+++avf+cvrv+svd+ge+e+aYq++v+igGh+fkG+LydqGl+e Sopen11g024510.2 230 SNNTPPRSFDTSSsHQGQVRAPAVFKCVRVTSVDEGEDEYAYQAVVKIGGHLFKGFLYDQGLDE 293 *****99875899******************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.6E-61	137	292	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.6E-27	139	181	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.0E-27	246	291	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MWSASASSRQ MQINYGLQPT EMGMFVVHPA SFHQHHENTI NFDPHGNSND NSNLSNTCTT 60 NTSLGVGVGV IPLLTATPLS NMVTFDDQDL VRNNRGGNNG GFQFFSNEQQ QNSTTNYTKN 120 STSSNKIILG GGGSISSTTC QDCGNQAKKD CTHRRCRTCC KSRGYDCNTH VKSTWVPASR 180 RRERQLMGAS TTTNRNVVAA GSSSQSTSSA KKPRLVNSQT TTTASHTSTS NNTPPRSFDT 240 SSSHQGQVRA PAVFKCVRVT SVDEGEDEYA YQAVVKIGGH LFKGFLYDQG LDEPKDNNNN 300 FPNLSDLHLG AVATNEHLYA ASTSGGGGLL GGGSNYGNQI N

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	0.0	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015056707.1	0.0	protein LATERAL ROOT PRIMORDIUM 1 isoform X2
Swissprot	Q94CK9	5e-75	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A0V0IF14	0.0	A0A0V0IF14_SOLCH; Putative serine/threonine-protein kinase-like
STRING	Solyc11g064800.1.1	0.0	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	2e-68	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]