PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g020770.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 590aa    MW: 65831.1 Da    PI: 4.4479
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g020770.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.33e-161452745
                      HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      snr   +s+R++g+lKKA+ELSvLCd+++ + +fs++gk
  Sopen11g020770.1 14 SNRIGVYSRRKKGLLKKANELSVLCDIDIFLAMFSPSGK 52
                      788889*******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.507160IPR002100Transcription factor, MADS-box
SMARTSM004328.3E-18159IPR002100Transcription factor, MADS-box
CDDcd002668.03E-16283No hitNo description
SuperFamilySSF554554.45E-19393IPR002100Transcription factor, MADS-box
PfamPF003191.3E-141456IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-82237IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-83758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MGRAKLKLHK LDGSNRIGVY SRRKKGLLKK ANELSVLCDI DIFLAMFSPS GKPSVYKSET  60
SSFEDMITKI VEVNPEERAK RKMECLETIK KACKKSDHDV NIGEQLCPGD LTTEDINFLS  120
HSLRIRLSDI EGRLRLWKNL DKIDNIQQLR KLEDSISKSL NEIAKHKYGM RSLIFSNGED  180
IHPSSVQHGM DLPSNFDARE ETHQCTLSHG CDSENTDVYE DLTSFCSSLP SDTGQDFQAS  240
ILMQHGINAW QELHQCSSVH GGNNENIDVY DDLNSFPLGY LEEPSFSFES YTNLVCNKEI  300
EISKPESKFF LPDEMFLDCE LNQEDIEREF GFTFDVPQVE LMDAHGNILG CCTNNGSMLP  360
HSDFVNIHHS STSTSGACDN MMLAESLNFL CGMDSLSSDA GEEFSTYSSI THGTNSLSTQ  420
LNVGLSVHGS ASENMDGYNL NVFDPSLKFD DEHKFHSSSS IQCGINSPVS FDAVQEGNRS  480
SSVHGGDSDS IYVYEDLNSF VQGFLEDPSV SFESSADPAC NHDIQNCKPG YENCSADKTF  540
LDCQINQEDL EIAFRSTIDL PLVEKRDVQE STFDCLNKGF GIRQLPSIIV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015058858.10.0uncharacterized protein LOC107004944
RefseqXP_015058859.10.0uncharacterized protein LOC107004944
TrEMBLA0A3Q7IXF80.0A0A3Q7IXF8_SOLLC; Uncharacterized protein
STRINGSolyc11g045310.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1394878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.24e-48AGAMOUS-like 30