PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g020260.3
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Whirly
Protein Properties Length: 241aa    MW: 27004.9 Da    PI: 10.8135
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g020260.3genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly202.17.2e-63652031139
            Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrka 93 
                       sv+k+kaal+ ++++ptf+ ldsg +kl+r+G ++l++ ++++erkydWek+q falsatev++l+++++++s+effhdp++ +sn+G+vrk+
  Sopen11g020260.3  65 SVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKS 157
                       79******************************************************************************************* PP

            Whirly  94 lkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                       l+++P +dGsG+f++lsv n+ +k+n++f+vPv+ aefav+r++++
  Sopen11g020260.3 158 LSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFS 203
                       *******************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.2E-7552222IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.26E-6458236IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.6E-5966200IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MLKVSRLLHP RHIRNQLLHK KLPGEDVKGS IWQNAINTFA AFSTVRQDVV ADAGKREGRV  60
FAPYSVFKGK AALSAEPRLP TFNRLDSGGV KLNRRGVIML TFWPSVGERK YDWEKRQLFA  120
LSATEVGSLI SMGTRDSSEF FHDPSMLSSN AGQVRKSLSI KPNADGSGYF ISLSVVNNNL  180
KTNDRFTVPV TTAEFAVMRT AFSFALPHIM GWDRFTNRPS ESISQSPSKV VPQLMEAEWD  240
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A1e-123502211172StWhy2
3n1i_A1e-123502211172protein StWhy2
3n1j_A1e-123502211172Protein StWhy2
3n1k_A1e-123502211172protein StWhy2
3n1l_A1e-123502211172protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2345040.0HM234504.1 Solanum tuberosum Why2 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015056791.11e-178single-stranded DNA-binding protein WHY2, mitochondrial isoform X1
SwissprotD9J0341e-172WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A3Q7JMC91e-173A0A3Q7JMC9_SOLLC; Uncharacterized protein
STRINGSolyc11g044750.1.11e-169(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97822228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.15e-96WHIRLY 2