PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g018710.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 163aa    MW: 18307.3 Da    PI: 6.1424
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g018710.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.7e-18657156
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f ta++Aa+a++ a+  ++g+
  Sopen11g018710.1  6 SEYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETAQMAAAAYDSAAFHFRGH 57
                      569****999.**********8...557***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.95E-22665IPR016177DNA-binding domain
CDDcd000181.25E-21664No hitNo description
SMARTSM003801.0E-34770IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-32765IPR001471AP2/ERF domain
PROSITE profilePS5103222.893764IPR001471AP2/ERF domain
PfamPF008478.9E-12757IPR001471AP2/ERF domain
PRINTSPR003672.8E-10819IPR001471AP2/ERF domain
PRINTSPR003672.8E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MSGITSEYRG VRKRKWGKWV SEIREPGKKT RIWLGSFETA QMAAAAYDSA AFHFRGHAAK  60
LNFPQLIEHF PKPASSSPED IRLAAQQAAI TVQNTNSMAS SSHGHGAPVT VGLSPTEIQA  120
INDFPMDSPH MWTTHEDINY TYEMSDYQEM DDCLWDYSST NSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-18867666ATERF1
3gcc_A2e-18867666ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015058043.11e-121ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I24e-50ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A3Q7JLX41e-119A0A3Q7JLX4_SOLLC; Uncharacterized protein
STRINGSolyc11g042580.1.11e-120(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.14e-45ERF family protein