PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen11g018670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 173aa MW: 19895.4 Da PI: 5.8919 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.1 | 9e-18 | 13 | 63 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr +k +g+Wv+eIr+p gk++r++lg++ ae+Aa+a++ a+ l+ge Sopen11g018670.1 13 VYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYEKAEMAAAAYDVAAFHLKGE 63 59****999.**********8...557***********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-20 | 13 | 72 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.142 | 13 | 72 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-29 | 13 | 73 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-30 | 13 | 78 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-11 | 13 | 63 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.66E-19 | 14 | 74 | No hit | No description |
PRINTS | PR00367 | 2.3E-9 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-9 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MENDQESKNN MDVYRGVRKR KWGKWVSEIR EPGKKTRIWL GSYEKAEMAA AAYDVAAFHL 60 KGERPNLRLN FPELIHTFPK PSSSRPEDVQ MAAHEAAMRF KPSIDDHPEE CGVGPVRVGL 120 SPSQIQAINE SPLDSPKMWM ELAGALLPVR EYTCPTDYFE DETQHHHESI WDF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-15 | 14 | 77 | 6 | 68 | ATERF1 |
3gcc_A | 1e-15 | 14 | 77 | 6 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015058008.1 | 1e-129 | ethylene-responsive transcription factor ERF022-like | ||||
Swissprot | Q9LQ28 | 2e-47 | ERF22_ARATH; Ethylene-responsive transcription factor ERF022 | ||||
TrEMBL | A0A3Q7IWN0 | 1e-125 | A0A3Q7IWN0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g042560.1.1 | 1e-125 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33760.1 | 8e-49 | ERF family protein |