PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g017580.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 1526aa    MW: 173492 Da    PI: 9.1364
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g017580.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.3e-1813201367354
               AP2    3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54  
                        y GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++
  Sopen11g017580.1 1320 YLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALAYDRAARSMR 1367
                        88******.**********933...5***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142235.8E-2285220No hitNo description
SuperFamilySSF577565.41E-6250288IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.108.1E-5265284IPR001878Zinc finger, CCHC-type
SMARTSM003430.008265281IPR001878Zinc finger, CCHC-type
PROSITE profilePS5015810.296266280IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.108.1E-5326332IPR001878Zinc finger, CCHC-type
PfamPF139761.9E-10453492IPR025724GAG-pre-integrase domain
PROSITE profilePS5099425.418503667IPR001584Integrase, catalytic core
Gene3DG3DSA:3.30.420.102.9E-34504660IPR012337Ribonuclease H-like domain
SuperFamilySSF530985.94E-43505664IPR012337Ribonuclease H-like domain
PfamPF006651.5E-26506621IPR001584Integrase, catalytic core
SuperFamilySSF566721.18E-248251047No hitNo description
PfamPF077273.9E-1008251068IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamilySSF566721.18E-2410761254No hitNo description
CDDcd092722.77E-5511511292No hitNo description
SMARTSM003804.5E-2813191387IPR001471AP2/ERF domain
PROSITE profilePS5103219.7713191381IPR001471AP2/ERF domain
CDDcd000182.53E-2413191380No hitNo description
PfamPF008475.6E-1113201367IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1713201367IPR016177DNA-binding domain
PRINTSPR003672.3E-713201331IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2413201380IPR001471AP2/ERF domain
PRINTSPR003672.3E-713421358IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1526 aa     Download sequence    Send to blast
MTNSSQTNAG TVSAATTTVA HNRSNAALAP AEKPAKFSGV DFKRWQQKMF FYLTTLSLQK  60
FINENVPVMS DETPADERFL VTEAWTHSDF LCKNYILSGL QDDLYNVYSN AKTSKELWDA  120
LEKKYKTEDA GMKKFIVAKF LDYKMIDSKT VVTQVQELQV IIHDLLAEGL IVNDAFQVAA  180
IIEKLPPLWK DFKNYLKHKR KEMTVEDLIV RLRIEEDNKA AEKRSRGNSA ISGVNFVEED  240
STKLKKRKKA SGPKSNPPKK KFNGNCFNCG KHGHRANECR GPKKDKKKKD QANLAESKGE  300
MDDLCAMLSE CNLVGNPREW WIDSGASCHV CANKELFSSY TPALTDEKLF MANSAVAKVE  360
GTGKVLLKMT SGKVVTLNRV SYVPELRKNL VSIPVLTKNG FKCVFVSDKV VVSKNDMYVG  420
KGYLSDGLFK LNVIAVDMNK DFASSYLLES KCLWHERLGH VNNKTLRKLI NLNILPKFEC  480
NKSKCQICVE SKYAKHSYKS VERNSNPLEL IHTDICDMKS TPSRGGKKYF ITFIDDCTRY  540
CYVYLLNSKD EAIDAFRQYK TEVENQLDKK IKMIRSDRGG EYESPFAEIC LENGIIHQTT  600
APYTPQSNGI AERKNRTLKE MMNALLISSG LPQNLWGEAI LTANQILNRV PHSKTNVIPY  660
EKWKGRKPNL KYFKVWGCLA KVQVPIPKRV KIGPKTVDCV FIGYATNSKA CRFLVHKSEH  720
PDIHDNTVME SDSAKFFEHI YPYKTRLESS SGGSKQPREE PKENEQNEES PRRSKRQKTS  780
TSFGSDFVTF LLESEPQTFK EAMLSSDSTS WKEVVNSEIE SILSNHTWEL VDLPPGNKPL  840
GSKWIFKRKM KDDGTIDKYK ARLVVKGFRQ KEGLDYFDTY SPVTRITSIR MLIALAAVYG  900
LEIHQMDVKT AFLNGELEEE IYIEQPEGFV VPGKEKKVCK LIKSLYGLKQ APKQWHAKFD  960
QTMLSNGFKI NECDKCVYIK DTPNQEVILC LYVDDMLIMS KDIANIKATK RMLASKFDMK  1020
DLGVADVILG IKILKTPNGL ALSQTHYIQK ILEKFKFLNF KRAKTPIDVN LHLAKNKGES  1080
QSQLDYASVL GSLMYVMNCT RPDIACAISK LSRYTSNPNH NHWLAMKRVL GYLDDTQNYA  1140
LHYNKYPAVL EGYSDANWIT GSTETKSTSG YVFTIGGGAI SWKSSKQTCI ARSTMESEFI  1200
ALDKAGEEAE WLRNFLEDIP FWPKPMAPIC IHCDSQAAIG RAGSIMYNGK SRHIRRRHNS  1260
VRQLLSSGII TIDYVKSKDN VSDPLTKGLN REGVEKSSTG MGLWPRTSHR GEDQKSNFRY  1320
LGVRRRPWGR YAAEIRDPNT KERHWLGTFD TAEEAALAYD RAARSMRVNN KSNKPTRTNF  1380
VYSDMPHGYS VTCIVSPDDQ YQHHHHHHHQ QQQQQQQQQQ QLLVFDQTGN APAPNVDYGP  1440
PHFSQFSLSN MNNVGGDSCD GVEFVSQQYY NPNYDMHMED GYRYDSKTRT STELPPLPED  1500
ITSSGNYYNL NSEFPNSEMG YDTIAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1613201379667ATERF1
3gcc_A2e-1613201379667ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244248KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G2W2470.0A0A2G2W247_CAPBA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.12e-25ERF family protein