PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g010600.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 275aa    MW: 31537.3 Da    PI: 7.1263
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g010600.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.85.8e-131047239
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                       ie++ +r+ t+ +R++g+ KK + LS+LCd+++++ii
  Sopen11g010600.1 10 LIEDHKKRKSTLVNRKAGLVKKISQLSILCDIKASMII 47
                      59**********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-14159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.974147IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-18292IPR002100Transcription factor, MADS-box
CDDcd002662.03E-17268No hitNo description
PRINTSPR004041.1E-6323IPR002100Transcription factor, MADS-box
PfamPF003194.2E-111148IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGRSKIKMEL IEDHKKRKST LVNRKAGLVK KISQLSILCD IKASMIISEG NYNYQIWPND  60
SNDVQELINL YKNQSQDGRT KRGKTLSNFF KNDEKKNNEF KVEKYPTWDS RFGYLSQKEL  120
QNLVDVVEKR IEKAKGKIES LKSMNDQDPN IGSSSFSHQQ QIWDNNNLMN QTTQWPFSYV  180
NPFTHHDNFF QANIPISGAN SMGAGVDNGL LTIDDYQFNN TDYSTMIETE NCLVNNGMGS  240
SSILHPMMNN GIDSSSTMEY PFIYNGYTHM PCGFQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015058095.10.0floral homeotic protein PMADS 2-like
TrEMBLA0A3Q7ITG20.0A0A3Q7ITG2_SOLLC; Uncharacterized protein
STRINGSolyc11g020320.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63421232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.14e-15M-type_MADS family protein