PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen11g010100.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 984aa MW: 110721 Da PI: 7.2624

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen11g010100.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	57.6	2.7e-18	889	936	4	52
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 +Wt +LH +F++av+qL G+ + Pk+il++m+++gLt+ +v+SHLQ Sopen11g010100.1 889 TKWTDDLHIKFMKAVKQL-GEGRCYPKEILHVMNLPGLTRMQVASHLQN 936 68**************.9**************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03732	4.7E-12	150	240	IPR005162	Retrotransposon gag domain
CDD	cd00303	1.28E-15	563	657	No hit	No description
SuperFamily	SSF46689	1.15E-12	884	936	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.6E-17	885	935	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-15	889	936	IPR006447	Myb domain, plants
Pfam	PF00249	4.1E-6	890	937	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 984 aa Download sequence Send to blast
MSNTRRGREP LFPYDHELER TLRNMNRNLG INDEDPNQNI PAPVDVHGQM LPDAPGEQQQ 60 RGQNPVPRPQ AYYRGYDNIA DSDGPLVLPP LPTGHTFVVT SSLMQMLTAR GLFSGLPSED 120 PHAHIAKVRA VCKSCVGRPD LDLDIIGLRV FPLSLTGEAA IWFTELPYNS IFTWNQLRDV 180 FLARYYPVSK KLNHKDRVNN FVALPGESVS SSWDRFTSFL RSVPNHRIDD ESLKEYFYRG 240 QDDNNKAVLD TIAGGSYGEC PYAEIAEKLE KISRNNKAWS TRKSDTGRNT FAVQSTHNPA 300 TDEIREEMAQ MRTELGLVLK HITGGAEKIN AVNYLPKPPP PNDECYYAED SYAVNEQTGV 360 SDRAPKAQIR IIGAKVKGTK VGSMIELQMA QLSATVNTRQ PGTLPSNTVQ NPKNDAHCMA 420 ITTRGGKQTI DPPMPSNEEK VRKDDDKVVK GSGEAEESTG KDAEVPMKVI PMPRPPPPFP 480 QRLVKKTEDG KYRRFITMLK QLSINVPLVE ALEQMPGYAK FMKDLVKMKR SVTFEDDDRL 540 QHCSAIATRS LVQKKEDPGA FTIPCTVGSL HFVKALCDLG ASINLMPLSI YKKLGLGDPK 600 PTAMRLLMAD RTVKRPIVIL HNVLVKVESF IFPADFVILD CEVNFEVPII LGRPFLATGR 660 ALVDMEKGQM KFRLNNEEAT FNVCRTMRQS GEIQSVSAIS HKEKMKKENE QKSAKQEFMV 720 GDLVLLDRSG LLCLPGKLKS KRTGPYLITQ VYPYGAVELK TKEGVRFKAH HQEILQKITL 780 QQSLTDTVTD RFTCDGPSYA SVVPIVCDDY NELEAKKTLD MGAYLYLKKP FDENLVTFLW 840 QFVWRKRIQK EKTKEGSIAD NDMGGENEEQ FEKKKDVSNT EVVRRKDYTK WTDDLHIKFM 900 KAVKQLGEGR CYPKEILHVM NLPGLTRMQV ASHLQNLGPL GANLPNEQDS EFDQVYSDDQ 960 NLGSPDANLP NEQGSEFDQV YSDD

Sequence ? help Back to Top

Protein Sequence Length: 984 aa Download sequence Send to blast

MSNTRRGREP LFPYDHELER TLRNMNRNLG INDEDPNQNI PAPVDVHGQM LPDAPGEQQQ  60
RGQNPVPRPQ AYYRGYDNIA DSDGPLVLPP LPTGHTFVVT SSLMQMLTAR GLFSGLPSED  120
PHAHIAKVRA VCKSCVGRPD LDLDIIGLRV FPLSLTGEAA IWFTELPYNS IFTWNQLRDV  180
FLARYYPVSK KLNHKDRVNN FVALPGESVS SSWDRFTSFL RSVPNHRIDD ESLKEYFYRG  240
QDDNNKAVLD TIAGGSYGEC PYAEIAEKLE KISRNNKAWS TRKSDTGRNT FAVQSTHNPA  300
TDEIREEMAQ MRTELGLVLK HITGGAEKIN AVNYLPKPPP PNDECYYAED SYAVNEQTGV  360
SDRAPKAQIR IIGAKVKGTK VGSMIELQMA QLSATVNTRQ PGTLPSNTVQ NPKNDAHCMA  420
ITTRGGKQTI DPPMPSNEEK VRKDDDKVVK GSGEAEESTG KDAEVPMKVI PMPRPPPPFP  480
QRLVKKTEDG KYRRFITMLK QLSINVPLVE ALEQMPGYAK FMKDLVKMKR SVTFEDDDRL  540
QHCSAIATRS LVQKKEDPGA FTIPCTVGSL HFVKALCDLG ASINLMPLSI YKKLGLGDPK  600
PTAMRLLMAD RTVKRPIVIL HNVLVKVESF IFPADFVILD CEVNFEVPII LGRPFLATGR  660
ALVDMEKGQM KFRLNNEEAT FNVCRTMRQS GEIQSVSAIS HKEKMKKENE QKSAKQEFMV  720
GDLVLLDRSG LLCLPGKLKS KRTGPYLITQ VYPYGAVELK TKEGVRFKAH HQEILQKITL  780
QQSLTDTVTD RFTCDGPSYA SVVPIVCDDY NELEAKKTLD MGAYLYLKKP FDENLVTFLW  840
QFVWRKRIQK EKTKEGSIAD NDMGGENEEQ FEKKKDVSNT EVVRRKDYTK WTDDLHIKFM  900
KAVKQLGEGR CYPKEILHVM NLPGLTRMQV ASHLQNLGPL GANLPNEQDS EFDQVYSDDQ  960
NLGSPDANLP NEQGSEFDQV YSDD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015161557.1	1e-169	PREDICTED: uncharacterized protein LOC107059504

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	1e-13	response regulator 2