PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g009280.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 221aa    MW: 24030.4 Da    PI: 4.3353
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g009280.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-071653239
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39
                       +WT++E+  ++++ +   +g+W++I+r    +Rt+kq
  Sopen11g009280.1 16 ASWTEQEHRSFLQGLAINEKGNWRSISRDCVITRTAKQ 53
                      58**************************8876788886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.3E-71453IPR009057Homeodomain-like
PfamPF002492.7E-61653IPR001005SANT/Myb domain
CDDcd001671.71E-51753No hitNo description
SuperFamilySSF466892.28E-51753IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MQNHDSKADV EWRKRASWTE QEHRSFLQGL AINEKGNWRS ISRDCVITRT AKQEDADATG  60
TSQVPHTKDM IGSAYGGSQA VPNTSSKSML PRDRTNAEQM IEVVGGESTD HNAVVNVGSD  120
VNVDAESTLL PSKQSCTAAS SGTYGHPIAR IGSELEALLT EPVDEDNDIT TIFDVGKAPT  180
SYPVLFGIPR YSAAEVALAQ LHPFDDEGIF DPDDLFTDPM F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361808.16e-71PREDICTED: transcription factor DIVARICATA-like
RefseqXP_015170955.16e-71PREDICTED: transcription factor DIVARICATA-like
TrEMBLA0A3Q7ISW91e-156A0A3Q7ISW9_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000239031e-141(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44541329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-12MYB family protein