PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen11g007720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 213aa MW: 23619.1 Da PI: 5.2135 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.4 | 1.7e-18 | 24 | 73 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr ++ +g+Wv+eIr p ++++r++lg++ t+e Aa+a++aa ++l+g Sopen11g007720.1 24 KYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALLCLKG 73 8*****998.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.72 | 24 | 83 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-11 | 24 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-18 | 24 | 83 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-28 | 24 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-32 | 24 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-8 | 25 | 36 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.44E-16 | 27 | 83 | No hit | No description |
PRINTS | PR00367 | 1.4E-8 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MSVSSSSSTT ASSNNNNMKT KKNKYKGVRM RSWGSWVSEI RAPNQKTRIW LGSYSTPEAA 60 ARAYDAALLC LKGPSASSNL NFPFNSTFYH HIDHHTCTTL SPKAIQRVAA AAAATPEQQN 120 IGLVLSDNNN DSTNPTISSP PQSSTSSEDI NDGCLLSNIN TFDQEMSMIE QWYNFDSPKY 180 NDMLHGTIFF DPPSMEEVYY EESSADIPLW SFC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00156 | DAP | Transfer from AT1G21910 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015057925.1 | 1e-159 | ethylene-responsive transcription factor ERF014 | ||||
Swissprot | Q9SFE4 | 3e-44 | ERF12_ARATH; Ethylene-responsive transcription factor ERF012 | ||||
TrEMBL | A0A3Q7JJV3 | 1e-115 | A0A3Q7JJV3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g012980.1.1 | 1e-116 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6177 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 1e-30 | ERF family protein |
Publications ? help Back to Top | |||
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