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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopen11g007250.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
GRAS |
Protein Properties |
Length: 542aa MW: 60641.5 Da PI: 5.4825 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen11g007250.1 | genome | spenn | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 421.8 | 5.7e-129 | 173 | 542 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94
+elL +cAeavs+ d + a+al++ l++++s +g+pm+Rl ay++e+++arl++s+s +yk+l+++e + se l+++++ ++++P++kf+
Sopen11g007250.1 173 KELLDACAEAVSDADISTAEALMSALEQRVSVSGEPMERLGAYVLEGIRARLLSSGSIIYKKLKCKEPT---GSELLSYMQVIFNMCPYYKFA 262
78999***************************************************************9...9******************** PP
GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
++ aN I ea+ +e+r+HiiDf+i qG QW+ Ll+ La Rp+gpp +RiTgv+++es + l+ +gerLa++A+++gvpfef+ +a +
Sopen11g007250.1 263 YMSANVIIREAMMNENRIHIIDFQIAQGSQWMFLLHDLAHRPGGPPFVRITGVDDEESAyaRGGGLQLVGERLAEVAKSCGVPFEFHG-AALS 354
*******************************************************999899999************************.8999 PP
GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
+++le+Lrvk+gEalaVn+ ++lh+++desvs+ ++rd++L+lvkslsPk+v++veqe+++n+++Fl rf e+l+yy+a+f+s++a pr+
Sopen11g007250.1 355 GCEVQLENLRVKHGEALAVNFPYMLHHMPDESVSTINHRDRLLRLVKSLSPKIVTLVEQESNTNTAPFLPRFRETLDYYTAMFESIDAARPRD 447
********************************************************************************************* PP
GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
++eri+ E+++++r++vn++acega+r+erhe ++kWr rl++aGF++ ++s ++ +++k++l++++ + yr e++g+l+lgWk+r+L + S
Sopen11g007250.1 448 DKERISAEEHCVARDVVNIIACEGADRVERHELFGKWRLRLMMAGFTQCQMSPSVGETIKHMLKEYNPN-YRYAESEGALYLGWKNRALATSS 539
*******************************************************************55.*********************** PP
GRAS 372 aWr 374
aWr
Sopen11g007250.1 540 AWR 542
**8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 542 aa
Download sequence Send
to blast |
MQASQRTQMS GSVHGLYNQQ MQQVEQYYAP YNVLKNSCKD SRSSGMQFSF QAQDEQFFTL 60 DSSPATDYVV NDSPPALSVS SNRSPFSPQC SQSYMSDLHH SSDNTCGSPL SGCSGIDDGD 120 LRHVLRELEN KLLGPESDTD DSCSCSLNDM VSKPSSITRW NRVLDMAPSL NLKELLDACA 180 EAVSDADIST AEALMSALEQ RVSVSGEPME RLGAYVLEGI RARLLSSGSI IYKKLKCKEP 240 TGSELLSYMQ VIFNMCPYYK FAYMSANVII REAMMNENRI HIIDFQIAQG SQWMFLLHDL 300 AHRPGGPPFV RITGVDDEES AYARGGGLQL VGERLAEVAK SCGVPFEFHG AALSGCEVQL 360 ENLRVKHGEA LAVNFPYMLH HMPDESVSTI NHRDRLLRLV KSLSPKIVTL VEQESNTNTA 420 PFLPRFRETL DYYTAMFESI DAARPRDDKE RISAEEHCVA RDVVNIIACE GADRVERHEL 480 FGKWRLRLMM AGFTQCQMSP SVGETIKHML KEYNPNYRYA ESEGALYLGW KNRALATSSA 540 WR
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |