PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen11g006580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 163aa MW: 18595.2 Da PI: 6.2804 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.8e-19 | 34 | 84 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr ++ +g+++AeIrd + ng r++lg+f+taeeAa a+++a+ + +g Sopen11g006580.1 34 KFIGVRKRP-WGKYAAEIRDSTRNG--IRVWLGTFDTAEEAALAYDQAAFCTRG 84 799******.**********44465..***********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.219 | 34 | 92 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.58E-29 | 34 | 93 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.4E-29 | 34 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-22 | 34 | 94 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-12 | 34 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.0E-33 | 34 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-9 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-9 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MDLKIQDEKI TSIQSNEVLE VDYNLHNIAK KPHKFIGVRK RPWGKYAAEI RDSTRNGIRV 60 WLGTFDTAEE AALAYDQAAF CTRGPSICLN FPVEKVRDSL TKMECSYLLQ DGLMSPAEAL 120 KEKHKKRSRK IKNVKEEENV LIFEDLGADL LDELLSEYSS SSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-27 | 21 | 94 | 1 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015058023.1 | 1e-119 | ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 8e-47 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | M1B0S3 | 1e-106 | M1B0S3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400034489 | 1e-107 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31230.1 | 2e-27 | ethylene-responsive element binding factor 15 |
Publications ? help Back to Top | |||
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