PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen11g004350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | AP2 | ||||||||
Protein Properties | Length: 592aa MW: 65154.3 Da PI: 6.8806 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.8 | 3.5e-15 | 177 | 236 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Sopen11g004350.1 177 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 236 57*******************666664478446*************************98 PP | |||||||
2 | AP2 | 47 | 6.4e-15 | 279 | 330 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Sopen11g004350.1 279 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 330 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.77E-17 | 177 | 246 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.52E-23 | 177 | 246 | No hit | No description |
Pfam | PF00847 | 4.7E-12 | 177 | 236 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.23 | 178 | 244 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-16 | 178 | 245 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-29 | 178 | 250 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-6 | 179 | 190 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-17 | 279 | 339 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.73E-25 | 279 | 340 | No hit | No description |
Pfam | PF00847 | 8.0E-10 | 279 | 330 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.177 | 280 | 338 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-18 | 280 | 338 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-33 | 280 | 344 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-6 | 320 | 340 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 592 aa Download sequence Send to blast |
MSMLMGNSCN SQHLENNQEP PKLENFLGIG EQKLQQVCNN NNNNNNNDYN IYCSTPNNIS 60 DNNANNIIGL SMIKNWLRNN PNSTTTTTTT TPSLLQDDKK EGDVVGVAGG GGNGNNAQSL 120 SLSMSTGGDG GGGGGGDNSC SPENNKQEIV SGNNDGQISG AIVVPKKSID TFGQRTSIYR 180 GVTRHRWTGR YEAHLWDNSC RREGQTRKGR QVYLGGYDKE EKAARAYDLA ALKYWGPTTT 240 TNFPISNYEK ELEEMKHMTR QEYVASLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV 300 AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFEIN RYDVKSILES STLPIGGAAK 360 RLKDVEQAEI ALDYQRASQE NIGTTHLMNG SMSAYGAGHC WPNITLQQTQ PLSAMHYSNP 420 YNSQQRLWCK QEVQDHDLTS QNFQDFHSLQ LGNAHNYLMG LDNSSSSSME QNNVTYHQGV 480 GYASNNNNHH GGGGFVLPHL NGSSSYGGEN DNEVKQLQLG THENIFGNYY HSQSATSNDS 540 IKVSNTLYDH QESACNSNNW MSTAVPMALA SRTSTVAVCH GVAPTFTMWN DS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015057921.2 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q8LSN2 | 1e-137 | BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2 | ||||
TrEMBL | A0A3Q7JIJ2 | 0.0 | A0A3Q7JIJ2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g008560.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7099 | 21 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 1e-133 | AP2 family protein |