PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen11g001990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 187aa MW: 21170.6 Da PI: 4.5874 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.7 | 9.3e-21 | 57 | 107 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd s+++ + r++lg+f+taeeAa a+++a+ +l+g Sopen11g001990.1 57 SYRGVRRRP-WGKYAAEIRD-STRN-SVRVWLGTFDTAEEAALAYDQAAYALHG 107 6********.**********.3433.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-29 | 57 | 116 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-14 | 57 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.117 | 57 | 115 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.18E-23 | 57 | 117 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.3E-32 | 57 | 121 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.50E-29 | 58 | 116 | No hit | No description |
PRINTS | PR00367 | 1.8E-11 | 58 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 81 | 97 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MDSSSSSSSY SYSQYHDLGF NENDTEDMLL LNVLSEAKED SSSNNIHEGS SKEVATSYRG 60 VRRRPWGKYA AEIRDSTRNS VRVWLGTFDT AEEAALAYDQ AAYALHGRMA VLNYPVEMVY 120 RSLMEIDCRF EDGCSPVLAL KKWHSMMKKG SNKKKEEKEM SCENVLVLED LGADYLEEIL 180 MLSESNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-28 | 58 | 117 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015058206.1 | 1e-136 | ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 1e-63 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A3Q7IPE4 | 1e-106 | A0A3Q7IPE4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g006050.1.1 | 1e-107 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-44 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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