PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g035910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 761aa    MW: 86793.8 Da    PI: 6.4321
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g035910.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS371.31.3e-1133877591374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL++cA+av+++d + a++lL++++ ++sp gd +qRla++f+ +L+arla+++s++ykal  ++ts    ++ l+a++l+   +P+ k+
  Sopen10g035910.1 387 LRSLLINCAQAVAADDCRSATELLKQVRLHSSPFGDGNQRLAHCFADGLEARLAGTGSQIYKALVNKRTS---AADFLKAYHLYLASCPFRKI 476
                       689*************************************************************999998...9******************* PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       s +t N++I +  ++++rvHiiDf+i +G+QWp+L+q +a+R++gpp+lRiTg++ p++g   +e++eetg+rL+++A++++vpfe+++ +ak
  Sopen10g035910.1 477 SGFTSNKTIIRKSKHATRVHIIDFGILYGFQWPTLIQRIAAREGGPPNLRITGIEFPQPGfrPAERIEETGRRLSDYAKSFNVPFEYQA-IAK 568
                       ***********************************************************9*****************************.7** PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       ++e+++le+L+++++E l+Vn+ ++ ++l+de+v ++s r+ vL+l+++++P+++++   +  ++++ F++rf e l ++salfd+lea++pr
  Sopen10g035910.1 569 KWETIRLEDLKLEKDEYLVVNCLYRFKNLHDETVLSDSSRTLVLNLIREINPDIFIHGIVNGAYSAPFFVTRFREVLFHFSALFDMLEANVPR 661
                       ********************************************************************************************* PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq.aklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                       e  er  +Ere++gre+ nv+aceg er+er et+++W+ r  +a F++ p+++++ ++ a   +r+ + + + +++++++++lgWk+r++++
  Sopen10g035910.1 662 EFPERLLIEREIFGREALNVIACEGWERVERPETYKQWQVRHLRARFTQTPFEQEEIMNiAVKKVRTSYHKDFVIDQDNKWMLLGWKGRTIYA 754
                       ****************************************************98776661555677777888********************* PP

              GRAS 370 vSaWr 374
                       +S+W+
  Sopen10g035910.1 755 LSCWT 759
                       ****6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.877361738IPR005202Transcription factor GRAS
PfamPF035144.4E-111387759IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MDPRFNRFPT TVNGFNLENQ SLLSFSDNWK NNEPKIGAIY PDQKIVNVPR FENSFIQHTV  60
SSLSNDPSTT SNIALTSEMG TEDEYNEDFD FSDTVLSYIN QMLMEEDMED KTHMLHESLE  120
LQAKERSFYE ALGKKYPPSP HQNLSINDQN GEIPEDYYSA CLYSSTSNVI DSSGYLIDPS  180
ISNDQNYSYE QGLFICNGPY SSIRSSNSIN NLVDGFLDSP VSPLHIPDIY NDSHPIWKFR  240
KGVEEASKFL PTYSKLLDNV VINDLLPQAK RGESGCAAAQ VEKRDVGATS PTGPRGTKNP  300
HRDDRDLEEE EERRCKQASV YAESTVRSDE FDVILLHSMG DGREALTAYR ESLKNARTKP  360
TVQSKGFAVG RGGRGKKQSG KKEVIDLRSL LINCAQAVAA DDCRSATELL KQVRLHSSPF  420
GDGNQRLAHC FADGLEARLA GTGSQIYKAL VNKRTSAADF LKAYHLYLAS CPFRKISGFT  480
SNKTIIRKSK HATRVHIIDF GILYGFQWPT LIQRIAAREG GPPNLRITGI EFPQPGFRPA  540
ERIEETGRRL SDYAKSFNVP FEYQAIAKKW ETIRLEDLKL EKDEYLVVNC LYRFKNLHDE  600
TVLSDSSRTL VLNLIREINP DIFIHGIVNG AYSAPFFVTR FREVLFHFSA LFDMLEANVP  660
REFPERLLIE REIFGREALN VIACEGWERV ERPETYKQWQ VRHLRARFTQ TPFEQEEIMN  720
IAVKKVRTSY HKDFVIDQDN KWMLLGWKGR TIYALSCWTP I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-483767608380Protein SCARECROW
5b3h_A5e-483767607379Protein SCARECROW
5b3h_D5e-483767607379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015056116.10.0scarecrow-like protein 9
RefseqXP_015056117.10.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A3Q7JH660.0A0A3Q7JH66_SOLLC; Uncharacterized protein
STRINGSolyc10g086530.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein