PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen10g035910.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GRAS

Protein Properties

Length: 761aa MW: 86793.8 Da PI: 6.4321

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen10g035910.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	371.3	1.3e-113	387	759	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lL++cA+av+++d + a++lL++++ ++sp gd +qRla++f+ +L+arla+++s++ykal ++ts ++ l+a++l+ +P+ k+ Sopen10g035910.1 387 LRSLLINCAQAVAADDCRSATELLKQVRLHSSPFGDGNQRLAHCFADGLEARLAGTGSQIYKALVNKRTS---AADFLKAYHLYLASCPFRKI 476 689***********************************************************999998...9*************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 s +t N++I + ++++rvHiiDf+i +G+QWp+L+q +a+R++gpp+lRiTg++ p++g +e++eetg+rL+++A++++vpfe+++ +ak Sopen10g035910.1 477 SGFTSNKTIIRKSKHATRVHIIDFGILYGFQWPTLIQRIAAREGGPPNLRITGIEFPQPGfrPAERIEETGRRLSDYAKSFNVPFEYQA-IAK 568 *******************************************************9*************************.7 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++e+++le+L+++++E l+Vn+ ++ ++l+de+v ++s r+ vL+l+++++P+++++ + ++++ F++rf e l ++salfd+lea++pr Sopen10g035910.1 569 KWETIRLEDLKLEKDEYLVVNCLYRFKNLHDETVLSDSSRTLVLNLIREINPDIFIHGIVNGAYSAPFFVTRFREVLFHFSALFDMLEANVPR 661 ******************************************************************************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq.aklllrkvksdgyrveeesgslvlgWkdrpLvs 369 e er +Ere++gre+ nv+aceg er+er et+++W+ r +a F++ p+++++ ++ a +r+ + + + +++++++++lgWk+r++++ Sopen10g035910.1 662 EFPERLLIEREIFGREALNVIACEGWERVERPETYKQWQVRHLRARFTQTPFEQEEIMNiAVKKVRTSYHKDFVIDQDNKWMLLGWKGRTIYA 754 ************************************************98776661555677777888***************** PP GRAS 370 vSaWr 374 +S+W+ Sopen10g035910.1 755 LSCWT 759 **6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.877	361	738	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.4E-111	387	759	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 761 aa Download sequence Send to blast
MDPRFNRFPT TVNGFNLENQ SLLSFSDNWK NNEPKIGAIY PDQKIVNVPR FENSFIQHTV 60 SSLSNDPSTT SNIALTSEMG TEDEYNEDFD FSDTVLSYIN QMLMEEDMED KTHMLHESLE 120 LQAKERSFYE ALGKKYPPSP HQNLSINDQN GEIPEDYYSA CLYSSTSNVI DSSGYLIDPS 180 ISNDQNYSYE QGLFICNGPY SSIRSSNSIN NLVDGFLDSP VSPLHIPDIY NDSHPIWKFR 240 KGVEEASKFL PTYSKLLDNV VINDLLPQAK RGESGCAAAQ VEKRDVGATS PTGPRGTKNP 300 HRDDRDLEEE EERRCKQASV YAESTVRSDE FDVILLHSMG DGREALTAYR ESLKNARTKP 360 TVQSKGFAVG RGGRGKKQSG KKEVIDLRSL LINCAQAVAA DDCRSATELL KQVRLHSSPF 420 GDGNQRLAHC FADGLEARLA GTGSQIYKAL VNKRTSAADF LKAYHLYLAS CPFRKISGFT 480 SNKTIIRKSK HATRVHIIDF GILYGFQWPT LIQRIAAREG GPPNLRITGI EFPQPGFRPA 540 ERIEETGRRL SDYAKSFNVP FEYQAIAKKW ETIRLEDLKL EKDEYLVVNC LYRFKNLHDE 600 TVLSDSSRTL VLNLIREINP DIFIHGIVNG AYSAPFFVTR FREVLFHFSA LFDMLEANVP 660 REFPERLLIE REIFGREALN VIACEGWERV ERPETYKQWQ VRHLRARFTQ TPFEQEEIMN 720 IAVKKVRTSY HKDFVIDQDN KWMLLGWKGR TIYALSCWTP I

Sequence ? help Back to Top

Protein Sequence Length: 761 aa Download sequence Send to blast

MDPRFNRFPT TVNGFNLENQ SLLSFSDNWK NNEPKIGAIY PDQKIVNVPR FENSFIQHTV  60
SSLSNDPSTT SNIALTSEMG TEDEYNEDFD FSDTVLSYIN QMLMEEDMED KTHMLHESLE  120
LQAKERSFYE ALGKKYPPSP HQNLSINDQN GEIPEDYYSA CLYSSTSNVI DSSGYLIDPS  180
ISNDQNYSYE QGLFICNGPY SSIRSSNSIN NLVDGFLDSP VSPLHIPDIY NDSHPIWKFR  240
KGVEEASKFL PTYSKLLDNV VINDLLPQAK RGESGCAAAQ VEKRDVGATS PTGPRGTKNP  300
HRDDRDLEEE EERRCKQASV YAESTVRSDE FDVILLHSMG DGREALTAYR ESLKNARTKP  360
TVQSKGFAVG RGGRGKKQSG KKEVIDLRSL LINCAQAVAA DDCRSATELL KQVRLHSSPF  420
GDGNQRLAHC FADGLEARLA GTGSQIYKAL VNKRTSAADF LKAYHLYLAS CPFRKISGFT  480
SNKTIIRKSK HATRVHIIDF GILYGFQWPT LIQRIAAREG GPPNLRITGI EFPQPGFRPA  540
ERIEETGRRL SDYAKSFNVP FEYQAIAKKW ETIRLEDLKL EKDEYLVVNC LYRFKNLHDE  600
TVLSDSSRTL VLNLIREINP DIFIHGIVNG AYSAPFFVTR FREVLFHFSA LFDMLEANVP  660
REFPERLLIE REIFGREALN VIACEGWERV ERPETYKQWQ VRHLRARFTQ TPFEQEEIMN  720
IAVKKVRTSY HKDFVIDQDN KWMLLGWKGR TIYALSCWTP I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-48	376	760	8	380	Protein SCARECROW
5b3h_A	5e-48	376	760	7	379	Protein SCARECROW
5b3h_D	5e-48	376	760	7	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015056116.1	0.0	scarecrow-like protein 9
Refseq	XP_015056117.1	0.0	scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A3Q7JH66	0.0	A0A3Q7JH66_SOLLC; Uncharacterized protein
STRING	Solyc10g086530.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein