PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g035760.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 348aa    MW: 38417.9 Da    PI: 4.5227
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g035760.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS203.71.1e-621333431214
              GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                       lv++L++cAea+++++l+la++l++ ++ + +s+ g +m++ a+yf+ AL ++++r         ++++ +e++  +       f++ + +lk
  Sopen10g035760.1 133 LVNTLMACAEAIQNNNLSLADELISDIRRIaVSQMGGAMKKEATYFADALYHKIHR--------TNSEDIDESSYPKDQVLIMSFYDSCLFLK 217
                       6899**************************778888********************........22222222222233333446********* PP

              GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                       f+h++aNq Ilea++ ++rvH+iDf+++qG QWpaLlqaL+ Rp+gpp +R+Tg+g +++    +++l+e+g +La++Ae++gv+fef+ +v+
  Sopen10g035760.1 218 FAHFIANQSILEAFADSKRVHVIDFSLNQGSQWPALLQALTLRPGGPPAFRLTGIGGHSHPedTTDALQEVGGKLAQLAESMGVEFEFRGFVV 310
                       *******************************************************9866557899**************************** PP

              GRAS 184 krledleleeLrvkp..gEalaVnlvlqlhrll 214
                       ++l+dle  +L+++p   E++aVn+v++lhrl+
  Sopen10g035760.1 311 HTLDDLEAPMLNIRPsnVESVAVNSVFKLHRLF 343
                       **************9999*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.463107348IPR005202Transcription factor GRAS
PfamPF035143.8E-60133343IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSSLEISMDT IMEDEDSFVS NTEAIIYAAS DISGWTHSLI SDHNIPNLSS STSVYEHQQI  60
STAAGGGGNE DDSMIVSSCA SSRWFNNNKQ IDDQQEIRIF NVDLRALCEN RLKSCGGSES  120
RGCLVYEESS VRLVNTLMAC AEAIQNNNLS LADELISDIR RIAVSQMGGA MKKEATYFAD  180
ALYHKIHRTN SEDIDESSYP KDQVLIMSFY DSCLFLKFAH FIANQSILEA FADSKRVHVI  240
DFSLNQGSQW PALLQALTLR PGGPPAFRLT GIGGHSHPED TTDALQEVGG KLAQLAESMG  300
VEFEFRGFVV HTLDDLEAPM LNIRPSNVES VAVNSVFKLH RLFSTWSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2614033426218Protein SCARECROW
5b3h_A2e-2614033425217Protein SCARECROW
5b3h_D2e-2614033425217Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249633.30.0DELLA protein GAI
TrEMBLA0A3Q7IN050.0A0A3Q7IN05_SOLLC; Uncharacterized protein
STRINGSolyc10g086380.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128641119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-85GRAS family protein