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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopen10g035750.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
GRAS |
Protein Properties |
Length: 539aa MW: 59570.5 Da PI: 5.0148 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen10g035750.1 | genome | spenn | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 315.2 | 1.4e-96 | 167 | 534 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
lv+ +++cA+a +++ la++l+ ++ + +++ g +m+++a++f+ A ++++r l p ++ + ++ f+ + +l
Sopen10g035750.1 167 LVNIIVACAKADKKNYSCLADRLIRNIIRRfeVAQFGGAMKKVATHFADAFDNKIHR--------LIP--QD---IVGLSYNHTSFYGNCLFL 246
578899*******************99888789999*********************........222..22...3344444455******** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
kf+h+taNq Ilea+++ +rvH+iDf+ +qGlQW aLlqaLa Rp+gpp +R+ g++ + + ++ l+e+g +La+fAe++gv+fef ++
Sopen10g035750.1 247 KFAHFTANQSILEAFANFNRVHVIDFSFNQGLQWQALLQALALRPGGPPAFRLSGISVQPMSddGSDPLQEVGFKLAQFAESIGVEFEFCGFM 339
********************************************************9854446799**************************9 PP
GRAS 183 akrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.e 272
a +l+dle ++L+++p +Ea+aVn+v++l+ l++ ++++e+ v++l+k+++Pk+v+++eqe++hn+ F r++ea +yys++fd l +
Sopen10g035750.1 340 AYALADLEASMLNIRPsnEEAVAVNSVFELQPLFSIPGAIEK----VMDLIKQIEPKIVTITEQEVNHNGRVFSSRIIEASRYYSTMFDFLeN 428
99*************999****************77777777....*********************************************44 PP
GRAS 273 aklpreseerikvErellg...reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361
+ + ++ ++++E+++l ei n+vaceg++r+ r tl++W r+ +aGF+ vpl+++++kq +ll+ ++ +gy+ve ++gsl+l
Sopen10g035750.1 429 LESISPNNLDTVMEKQCLDvmvSEIYNLVACEGTKRIVRSGTLGQWLVRIYSAGFNLVPLTSNTYKQGAMLLASFPnAEGYKVEVKDGSLMLS 521
4445566899999*9986433389********************************************************************* PP
GRAS 362 WkdrpLvsvSaWr 374
W++ pL++ S Wr
Sopen10g035750.1 522 WNSLPLIANSTWR 534
************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 539 aa
Download sequence Send
to blast |
MSSREISMDT IMEDEDSFVS NTNAIIYAAS DISGWTHSLF SDNNIPNSSS STSVDEHHQQ 60 ISTAAGGGGK EDDSMTVSSS ASSSWFNNNK QIDDHQEIRI FNVDFRSLCN NTCSGFESRG 120 GLLPDTGRTV NGDASVLLVN IIVACAKADK KNYSCLADRL IRNIVLLVNI IVACAKADKK 180 NYSCLADRLI RNIIRRFEVA QFGGAMKKVA THFADAFDNK IHRLIPQDIV GLSYNHTSFY 240 GNCLFLKFAH FTANQSILEA FANFNRVHVI DFSFNQGLQW QALLQALALR PGGPPAFRLS 300 GISVQPMSDD GSDPLQEVGF KLAQFAESIG VEFEFCGFMA YALADLEASM LNIRPSNEEA 360 VAVNSVFELQ PLFSIPGAIE KVMDLIKQIE PKIVTITEQE VNHNGRVFSS RIIEASRYYS 420 TMFDFLENLE SISPNNLDTV MEKQCLDVMV SEIYNLVACE GTKRIVRSGT LGQWLVRIYS 480 AGFNLVPLTS NTYKQGAMLL ASFPNAEGYK VEVKDGSLML SWNSLPLIAN STWRLCSQV
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}. |