PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g035680.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 266aa    MW: 31168.3 Da    PI: 7.9157
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g035680.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.8e-161158148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd ll +++ ++G g W++++ + g++R++k+c++rw++yl
  Sopen10g035680.1 11 KGSWTEEEDILLRKCIDKYGEGKWHLVPFRAGLNRCRKSCRLRWLNYL 58
                      799*******************************************97 PP

2Myb_DNA-binding45.32e-1464109148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg +  +E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Sopen10g035680.1  64 RGDFALDEIDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 109
                       5677789***************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.224662IPR017930Myb domain
SuperFamilySSF466891.16E-278105IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-21860IPR009057Homeodomain-like
SMARTSM007173.4E-131060IPR001005SANT/Myb domain
PfamPF002493.4E-151158IPR001005SANT/Myb domain
CDDcd001678.33E-91358No hitNo description
Gene3DG3DSA:1.10.10.608.3E-2261113IPR009057Homeodomain-like
PROSITE profilePS5129418.49763113IPR017930Myb domain
SMARTSM007175.8E-1463111IPR001005SANT/Myb domain
PfamPF002494.9E-1364109IPR001005SANT/Myb domain
CDDcd001678.33E-970109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MNIAKTLGVR KGSWTEEEDI LLRKCIDKYG EGKWHLVPFR AGLNRCRKSC RLRWLNYLRP  60
HIKRGDFALD EIDLILRLHK LLGNRWSLIA GRLPGRTAND VKNYWNTHLH KKLLITPPQI  120
QENKYNNTLK IITKSTILRP RPRPGPRPRT FSSENNISWC TNNSMITNTL DKDDEQSNKE  180
IAVNICEKPT RETPSSSSID DDGVKWWTNL LENWKEFEEE ATAVLNFEEE NKLLPNLLYE  240
EHNSTTMQHG ENDDFSVDID LWNLFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-21111137108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055374.10.0transcription factor MYB113-like
SwissprotQ9FNV96e-64MY113_ARATH; Transcription factor MYB113
TrEMBLA0A3Q7IPC01e-174A0A3Q7IPC0_SOLLC; Uncharacterized protein
STRINGSolyc10g086290.1.11e-179(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-63myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]