PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen10g035680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 266aa MW: 31168.3 Da PI: 7.9157 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.8e-16 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll +++ ++G g W++++ + g++R++k+c++rw++yl Sopen10g035680.1 11 KGSWTEEEDILLRKCIDKYGEGKWHLVPFRAGLNRCRKSCRLRWLNYL 58 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.3 | 2e-14 | 64 | 109 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg + +E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Sopen10g035680.1 64 RGDFALDEIDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 109 5677789***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.224 | 6 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.16E-27 | 8 | 105 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-21 | 8 | 60 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-13 | 10 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-15 | 11 | 58 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.33E-9 | 13 | 58 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-22 | 61 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.497 | 63 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-14 | 63 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-13 | 64 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.33E-9 | 70 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 266 aa Download sequence Send to blast |
MNIAKTLGVR KGSWTEEEDI LLRKCIDKYG EGKWHLVPFR AGLNRCRKSC RLRWLNYLRP 60 HIKRGDFALD EIDLILRLHK LLGNRWSLIA GRLPGRTAND VKNYWNTHLH KKLLITPPQI 120 QENKYNNTLK IITKSTILRP RPRPGPRPRT FSSENNISWC TNNSMITNTL DKDDEQSNKE 180 IAVNICEKPT RETPSSSSID DDGVKWWTNL LENWKEFEEE ATAVLNFEEE NKLLPNLLYE 240 EHNSTTMQHG ENDDFSVDID LWNLFN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-21 | 11 | 113 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015055374.1 | 0.0 | transcription factor MYB113-like | ||||
Swissprot | Q9FNV9 | 6e-64 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A3Q7IPC0 | 1e-174 | A0A3Q7IPC0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g086290.1.1 | 1e-179 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-63 | myb domain protein 113 |
Publications ? help Back to Top | |||
---|---|---|---|
|