PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g035660.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 259aa    MW: 29929 Da    PI: 7.8751
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g035660.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.2e-171360148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd ll ++++++G g W++++ + g++R++k+c++rw++yl
  Sopen10g035660.1 13 KGSWTEEEDFLLRKCINKYGEGKWHLVPIRAGLNRCRKSCRLRWLNYL 60
                      799*******************************************97 PP
2Myb_DNA-binding44.73.2e-1466110147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg +  +E +l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  Sopen10g035660.1  66 RGDFASDEIDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTN 110
                       6778899***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-22862IPR009057Homeodomain-like
PROSITE profilePS5129422.996864IPR017930Myb domain
SuperFamilySSF466898.99E-2810107IPR009057Homeodomain-like
SMARTSM007175.1E-151262IPR001005SANT/Myb domain
PfamPF002493.2E-161360IPR001005SANT/Myb domain
CDDcd001672.40E-101560No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2063115IPR009057Homeodomain-like
SMARTSM007175.7E-1365113IPR001005SANT/Myb domain
PROSITE profilePS5129416.9965115IPR017930Myb domain
PfamPF002491.0E-1266111IPR001005SANT/Myb domain
CDDcd001678.24E-972111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MNSTPMSSLG VRKGSWTEEE DFLLRKCINK YGEGKWHLVP IRAGLNRCRK SCRLRWLNYL  60
RPHIKRGDFA SDEIDLILRL HKLLGNRWSL IAGRLPGRTA NDVKNYWNTN LLRKVNITKI  120
VPREKFKSKR GEISTKIEII KPQARKFISN TKKNITNNIV IVDKEEQCKE IISEKQTRDA  180
SIDNGDEWWA NLLENCNNDV EEEEEEGGGG VTNYEKTLTS LLHEEITPPL NGGGNFMQQG  240
QSDGWDDFFV DIDIWDLLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23131167109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089442.10.0transcription factor MYB113-like
SwissprotQ9FNV96e-64MY113_ARATH; Transcription factor MYB113
TrEMBLA0A3Q7INJ71e-170A0A3Q7INJ7_SOLLC; Uncharacterized protein
STRINGSolyc10g086270.1.11e-171(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-64myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]