PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g035650.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 133aa    MW: 15760.5 Da    PI: 11.033
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g035650.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.1e-1017511448
                      HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +++ ++G g W++++ + g++R++k+c++rw++yl
  Sopen10g035650.1 17 KCIDKYGEGKWHLVPIRAGLNRCRKSCRLRWLNYL 51
                      57889*****************************7 PP
2Myb_DNA-binding47.44.3e-1557101147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg + ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  Sopen10g035650.1  57 RGDFEQDEVDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTN 101
                       78999*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.9953IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-141658IPR009057Homeodomain-like
CDDcd001673.43E-41651No hitNo description
SuperFamilySSF466899.84E-211798IPR009057Homeodomain-like
PfamPF002491.7E-81751IPR001005SANT/Myb domain
PROSITE profilePS500906.4581951IPR017877Myb-like domain
PROSITE profilePS5129423.26252106IPR017930Myb domain
SMARTSM007171.7E-1356104IPR001005SANT/Myb domain
PfamPF002499.7E-1457102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2259106IPR009057Homeodomain-like
CDDcd001672.31E-962102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MIEMKDGFPN RGWQDRKCID KYGEGKWHLV PIRAGLNRCR KSCRLRWLNY LRPHIKRGDF  60
EQDEVDLILR LHKLLGNRWS LIAGRLPGRT ANDVKNYWNT NLLRKLNTTK IVLRQKINNK  120
CGSMVDKFTG KLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-211410814110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2351211e-168FJ235121.1 Solanum habrochaites anthocyanin 1 (ANT1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234417.11e-71anthocyanin 1
SwissprotQ9FNV95e-50MY113_ARATH; Transcription factor MYB113
TrEMBLC7AZ732e-70C7AZ73_SOLLC; MYB transcription factor ANT1 (Fragment)
STRINGSolyc10g086260.1.16e-71(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-52myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]