PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g035640.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 269aa    MW: 31298.6 Da    PI: 8.413
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g035640.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.6e-17956148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT++Ed ll ++++++G g W++++++ g++R++k+c++rw++yl
  Sopen10g035640.1  9 KGSWTEQEDFLLRNCIQKYGEGKWHLVPARAGLNRCRKSCRLRWLNYL 56
                      799*******************************************97 PP
2Myb_DNA-binding45.71.5e-1462106147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg + ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++
  Sopen10g035640.1  62 RGDFAPDEVDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTH 106
                       788999****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-22358IPR009057Homeodomain-like
PROSITE profilePS5129416.333456IPR017930Myb domain
SuperFamilySSF466892.6E-286103IPR009057Homeodomain-like
SMARTSM007171.2E-14858IPR001005SANT/Myb domain
PfamPF002494.5E-16956IPR001005SANT/Myb domain
CDDcd001676.46E-101156No hitNo description
PROSITE profilePS5129424.34157111IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2259111IPR009057Homeodomain-like
SMARTSM007174.8E-1461109IPR001005SANT/Myb domain
PfamPF002492.8E-1362106IPR001005SANT/Myb domain
CDDcd001673.73E-967107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MCASLGVRKG SWTEQEDFLL RNCIQKYGEG KWHLVPARAG LNRCRKSCRL RWLNYLRPHI  60
KRGDFAPDEV DLILRLHKLL GNRWSLIAGR LPGRTANDVK NYWNTHFHKK LSIIAPHLHP  120
RPRSHPRLQI KHKSIAVTKN EIIRPQPRNF SNVKKNDSHW CNNKSMITNT LDKDDKRCNE  180
IVVNICEKPI GENTSSIDDG VEWWTNLLEN CIEIEEETAI TNFEKTPTML LHEEISPPLI  240
NGEDNSMQQG PTNNWDDFST DIDLWNLLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2291117108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6471170.0HQ647117.1 Solanum lycopersicum cultivar Zhongshu-6 MYB transcriptional factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089542.10.0transcription factor MYB113-like isoform X1
SwissprotQ9FNV91e-61MY113_ARATH; Transcription factor MYB113
TrEMBLK4D4570.0K4D457_SOLLC; MYB transcriptional factor
STRINGSolyc10g086250.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.17e-63myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]