PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g035510.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARF
Protein Properties Length: 623aa    MW: 69632.7 Da    PI: 7.4617
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g035510.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3741.8e-23112212198
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+lt+sd+++ g +++pk++a+++        +++   +tl+ +d +g+sW++++iyr++++r++lt+GW+ Fv++++L +gD++vF   +
  Sopen10g035510.1 112 FAKTLTQSDANNGGGFSVPKNCADTIfptldynVNPPV--QTLSATDIHGKSWQFRHIYRGTPERHLLTTGWSTFVNEKKLVAGDSIVFL--R 200
                       89**********************99****98533333..49************************************************..4 PP

                       SSEE..EEEEE- CS
                B3  87 rsefelvvkvfr 98 
                       +++ +  ++++r
  Sopen10g035510.1 201 NENDKISIGIRR 212
                       577777888887 PP
2Auxin_resp101.11.4e-33272354183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       a + a+++++Fev+++Pr++t+eF vk+++v++al+++++ GmRfkm feted     ++Gt+++v++ dp++Wp+S+Wr+L+
  Sopen10g035510.1 272 ATKLATNGQPFEVIFYPRSTTPEFFVKASRVKAALQIPWCSGMRFKMPFETEDLVISWFMGTISSVQANDPSQWPDSPWRMLQ 354
                       567899************************************************99999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-36103215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.16E-29107214IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-19111212No hitNo description
PROSITE profilePS5086313.07112214IPR003340B3 DNA binding domain
SMARTSM010192.5E-19112214IPR003340B3 DNA binding domain
PfamPF023625.1E-21112212IPR003340B3 DNA binding domain
PfamPF065076.5E-29272354IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MADNKSNCFD SRLWQACAGT IVKMPAVNSI VLYFPQGHAE HAGVNVEFRS DVKIPSYIPC  60
RVLSIKYMAE RETDEVFAKI RLTPVRLSEF FETADEGMVK IGSDNSRKPL SFAKTLTQSD  120
ANNGGGFSVP KNCADTIFPT LDYNVNPPVQ TLSATDIHGK SWQFRHIYRG TPERHLLTTG  180
WSTFVNEKKL VAGDSIVFLR NENDKISIGI RRIKKKSVAI EPETSPWWFP SVGNLTIPRG  240
GFSAFLRDDQ NTNSSWSLIN RGNVKAESVI EATKLATNGQ PFEVIFYPRS TTPEFFVKAS  300
RVKAALQIPW CSGMRFKMPF ETEDLVISWF MGTISSVQAN DPSQWPDSPW RMLQVTWDEP  360
NLLHNVMCVN PWLVEPVSNM PTINFNPYTP PLKKLRLSHT SDFPLNGPLP MSGFPNNHLE  420
FSIDPPMSSF PIHHLLRPNG CLPNNTPVGM QGARHAPYNL SLPDIHTNNL LSSLSPVGFP  480
SLYHVVASPS TSNNTMIPKP SKNADISSLL TLGSSTQTIK KFDSEKTTQF VLFGQPIVIE  540
QQTSQSNSRI SVSPRHATNS FSDGNEYKKE NTSDSSDTSF VHNSVQHYLP SQSFRSEENV  600
EIGHSKVFIE SEDIGQTKQL GEW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-78937551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055116.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A3Q7INH10.0A0A3Q7INH1_SOLLC; Auxin response factor
STRINGSolyc10g086130.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-167auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]