PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g033820.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 467aa    MW: 51666.1 Da    PI: 9.9717
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g033820.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.6e-32194250360
                       -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       DgynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkvers  d+++ ei+Y+geHnh+k
  Sopen10g033820.1 194 DGYNWRKYGQKQVKGSEYPRSYYKCTHLKCPVKKKVERSY-DGQIAEIVYRGEHNHPK 250
                       9***************************************.***************85 PP
2WRKY99.12.7e-31386442258
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                       +Dg++WrKYGqK+vkgs +prsYYrCts++C+++k ver+ +dpk++++tYeg+Hnh
  Sopen10g033820.1 386 EDGFRWRKYGQKVVKGSSYPRSYYRCTSPKCSMRKFVERTMDDPKAFITTYEGKHNH 442
                       7******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-29182251IPR003657WRKY domain
SuperFamilySSF1182903.27E-25191251IPR003657WRKY domain
SMARTSM007744.0E-35192250IPR003657WRKY domain
PfamPF031061.1E-24194249IPR003657WRKY domain
PROSITE profilePS5081123.835194251IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-31376445IPR003657WRKY domain
SuperFamilySSF1182902.48E-27380445IPR003657WRKY domain
PROSITE profilePS5081132.019380445IPR003657WRKY domain
SMARTSM007741.2E-34385444IPR003657WRKY domain
PfamPF031066.7E-25386442IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MEVNEPAKIA IVRPVASRPR CPIYKSFSEL LAGAVDISST NVRSEMAITA IRPKTVRLKP  60
VTNHALVGES SSQVGVSEAP GGCRSDYILQ SVEKPKVLYK PIAKLAPRKT IPLLENKGSS  120
ASDQRREKAD AKADAQSAKE AKQHHDLTTE SKRSLLAKSG EDKRIVHSTI VSESTEEVPQ  180
SLINTSNVDR PSYDGYNWRK YGQKQVKGSE YPRSYYKCTH LKCPVKKKVE RSYDGQIAEI  240
VYRGEHNHPK PQPPKRNLSD VQVRAAVCND TSKETNNPAW SNQHPQTSEA YVCRIENPND  300
VGLTINSAHS SKAPCFYDPI AAAGMHTDAG NSEDSAEGSK KLKATCGDTK TKRRKTKGLC  360
NGAGTSGEST FPYIPKQSTT DSEITEDGFR WRKYGQKVVK GSSYPRSYYR CTSPKCSMRK  420
FVERTMDDPK AFITTYEGKH NHGVPNRRPN SEASKTSSKS SAMKEKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-28185445177Probable WRKY transcription factor 4
2lex_A2e-28185445177Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015056306.10.0WRKY transcription factor 44
RefseqXP_015056307.10.0WRKY transcription factor 44
RefseqXP_015056308.10.0WRKY transcription factor 44
RefseqXP_015056309.10.0WRKY transcription factor 44
RefseqXP_015056310.10.0WRKY transcription factor 44
RefseqXP_015056311.10.0WRKY transcription factor 44
RefseqXP_015056312.10.0WRKY transcription factor 44
RefseqXP_015056313.10.0WRKY transcription factor 44
RefseqXP_027768361.10.0WRKY transcription factor 44
RefseqXP_027768362.10.0WRKY transcription factor 44
TrEMBLM1AR980.0M1AR98_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000285300.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99512227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.16e-76WRKY family protein