PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g033030.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 191aa    MW: 20606.9 Da    PI: 4.9777
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g033030.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-181465155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      + ykG+r++k++g+Wv+eIr+p     r   r++lg+f t+e+Aa a++ a+++l+g
  Sopen10g033030.1 14 PVYKGIRRRKSSGKWVSEIREP-----RspNRIWLGTFPTPEMAAVAYDVAALALKG 65
                      68*******************9.....4489***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-121465IPR001471AP2/ERF domain
SMARTSM003807.3E-321579IPR001471AP2/ERF domain
PROSITE profilePS5103222.6691573IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-201575IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-281575IPR001471AP2/ERF domain
CDDcd000185.14E-291675No hitNo description
PRINTSPR003672.7E-71627IPR001471AP2/ERF domain
PRINTSPR003672.7E-75575IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSGSGSGSES GRHPVYKGIR RRKSSGKWVS EIREPRSPNR IWLGTFPTPE MAAVAYDVAA  60
LALKGRDAEL NFPNSAPSLP VPATNSPRDI QTAAACAAAA IGAAGDALIG GRSNNSNSNS  120
NSRTVSREVE SNYLIPNNNE YNFMDEDLIF DMPNVIMNMA EGMLLSPPRL NHLPPDDDYI  180
GGADQNLWNY P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-14175374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055093.21e-137ethylene-responsive transcription factor ERF024, partial
SwissprotQ9SJR08e-59ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A3Q7JG661e-105A0A3Q7JG66_SOLLC; Uncharacterized protein
STRINGSolyc10g083560.1.11e-106(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.12e-46ERF family protein