PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g032980.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRF
Protein Properties Length: 388aa    MW: 42247.8 Da    PI: 9.2758
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g032980.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC80.91.1e-25156199144
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                       d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgrsrsrk++e
  Sopen10g032980.1 156 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHVHRGRSRSRKPVE 199
                       79***************************************987 PP
2QLQ34.18.6e-1381115236
               QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                       +F+ aQ+q+L+   l++++++a++PvP+eLl  ++
  Sopen10g032980.1  81 YFSLAQWQELELHSLIFRHFVAGAPVPSELLHLVK 115
                       7*****************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009510.009180116IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.11381116IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.4E-781114IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.141156200IPR014977WRC domain
PfamPF088791.2E-21157199IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDFNVKQWSN QHESENQESP TKLPRLLLDF HSVSSDSASA AALPLFVSEP TTSTTTCTKL  60
MSDSTTTVTT KFPRIGSGGG YFSLAQWQEL ELHSLIFRHF VAGAPVPSEL LHLVKKSIIA  120
SSPPPPSYYF AHPYQQYPHY QQALMQSGYW GRAAMDPEPG RCRRTDGKKW RCSRDVVAGQ  180
KYCERHVHRG RSRSRKPVEI PTPANNGSKN NNTVSHHQAF GKMAGHAHAG APQFSLSGHS  240
PSTNAPFHPN QRPIKGPPQE VLQKDVSIGD GKSSSGQILR HFFDDWPRQQ QLQEGDNAAT  300
SLSISMPGVG GNPSSDFSLK LSTGNDYDSG TQVSNVERSA WGTSHHQVAS MGGPLAEALR  360
SSTTNSSPTS VLHQLARGSA SEASYIST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0139770.0BT013977.1 Lycopersicon esculentum clone 133022R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089406.10.0growth-regulating factor 3-like
TrEMBLM1CQP20.0M1CQP2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000726280.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32832138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.11e-69growth-regulating factor 4