PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen10g032830.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 415aa MW: 46652.3 Da PI: 7.1264

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen10g032830.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.5	3.1e-33	44	98	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl Sopen10g032830.1 44 KPRLKWTPDLHERFIEAVTQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 98 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.517	41	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-31	42	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-16	43	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.5E-24	44	99	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-9	46	97	IPR001005	SANT/Myb domain
Pfam	PF14379	8.6E-25	143	189	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MYHHHHQASN MHPSTRMSFP ERHLFLQGGN ANGDSGLVLS TDAKPRLKWT PDLHERFIEA 60 VTQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQKYRLSK NHHGQANISG VNKAAASMEK 120 ICESTGSPKS NPSIGHQPNN NIPISEAIQM QIDVQRRLHE QLEVQRHLQL RIEAQGKYLQ 180 AVLEKAQETL GTQNLGTIGL EAAKVQLSDL VSKVSNQCLN SAFSEIKELS GFHTPQTQAT 240 QRLADCSMDS CLTSSEGPLR DLQEMHNNQL GLRNLNFRPC TEEIENQTRL QQTALRWRDD 300 LKENRLFPKI DEDTEKEFAK ETNWSNLSMN VGIQGGKRNV NSSYVDERLN GIDADIKLFH 360 QAATDRSDST KPEKQVSPQE YKLPYFAPKL DLNTDDQTDA ASNCKQLDLN GFSWN

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MYHHHHQASN MHPSTRMSFP ERHLFLQGGN ANGDSGLVLS TDAKPRLKWT PDLHERFIEA  60
VTQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQKYRLSK NHHGQANISG VNKAAASMEK  120
ICESTGSPKS NPSIGHQPNN NIPISEAIQM QIDVQRRLHE QLEVQRHLQL RIEAQGKYLQ  180
AVLEKAQETL GTQNLGTIGL EAAKVQLSDL VSKVSNQCLN SAFSEIKELS GFHTPQTQAT  240
QRLADCSMDS CLTSSEGPLR DLQEMHNNQL GLRNLNFRPC TEEIENQTRL QQTALRWRDD  300
LKENRLFPKI DEDTEKEFAK ETNWSNLSMN VGIQGGKRNV NSSYVDERLN GIDADIKLFH  360
QAATDRSDST KPEKQVSPQE YKLPYFAPKL DLNTDDQTDA ASNCKQLDLN GFSWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015089339.1	0.0	myb-related protein 2-like isoform X1
Refseq	XP_015089340.1	0.0	myb-related protein 2-like isoform X1
Swissprot	Q9SQQ9	1e-124	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A3Q7JG39	0.0	A0A3Q7JG39_SOLLC; Uncharacterized protein
STRING	Solyc10g083340.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2946	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-126	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]