PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g032690.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 289aa    MW: 32787 Da    PI: 7.4663
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g032690.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.16.3e-3230135199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k ltpsdv+k++rlv+pk+ ae++       + + e+++ l++ede g+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F++++
  Sopen10g032690.1  30 FEKPLTPSDVGKLNRLVIPKQNAEKYfplndsiNDSGEKGFLLSFEDELGKLWKFRYSYWNSSQSYVLTKGWSRFVKEKKLDAGDVVLFERHR 122
                       99****************************99944556899*************************************************877 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                        ++++ +++++rk
  Sopen10g032690.1 123 VDGERQFIGWRRK 135
                       799999****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.1E-3924137IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.5E-3125132IPR015300DNA-binding pseudobarrel domain
CDDcd100171.35E-2928126No hitNo description
PfamPF023629.9E-2930136IPR003340B3 DNA binding domain
PROSITE profilePS5086314.12830135IPR003340B3 DNA binding domain
SMARTSM010196.2E-2430136IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEESLRNSSS PPKQNSNQLE EIEIPKEHLF EKPLTPSDVG KLNRLVIPKQ NAEKYFPLND  60
SINDSGEKGF LLSFEDELGK LWKFRYSYWN SSQSYVLTKG WSRFVKEKKL DAGDVVLFER  120
HRVDGERQFI GWRRKNGAAV AAASATTVAP PGCGGGWGQV HPFPSAAGVP YQTDFLHAGR  180
GVMHNQLTTP NGNNTRRQVR LFGVNLECEV GDSSSWSESS TPDGSISSNH HQQSQEYYRS  240
QAGQHYYQYQ VHYSNPHANP PASSYNNNHH YNTDMDYSRD VNQMRYHQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-47261354113B3 domain-containing transcription factor NGA1
5os9_B4e-47261354113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015056425.10.0B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ23e-66Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A3Q7JG250.0A0A3Q7JG25_SOLLC; Uncharacterized protein
STRINGSolyc10g083210.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.24e-64B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]