PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen10g032360.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YA

Protein Properties

Length: 214aa MW: 24194.4 Da PI: 9.5883

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen10g032360.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	79.2	7.5e-25	44	98	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p++VNaKQy++Il+RR+ Rak e++ l k rkp+lh SRh hA+rRpRg gGrF Sopen10g032360.1 44 TPIFVNAKQYNGILRRRKFRAKEIEKN-L-LKPRKPFLHLSRHLHAKRRPRGGGGRF 98 7******************977745.4.5***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.0E-25	41	101	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	28.489	42	101	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.3E-21	45	98	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.8E-18	45	67	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.8E-18	75	98	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MEQPMSFDSQ SYNMDYQGHF DLGLFGQPLG RIMLPLNFTS HDETPIFVNA KQYNGILRRR 60 KFRAKEIEKN LLKPRKPFLH LSRHLHAKRR PRGGGGRFLN TRKTDGSIND DANGTTKTSN 120 NKCHHTRSQN SEVLQCGLFN FNSTKDTTNS ISSIDAFLDI TNTGHDILMA SKWGSAAAVD 180 NCCCNNLRID DVFTLTTTKL RAMDSVPTAI WLLE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	9e-15	43	99	2	60	HAPB protein
4g92_A	9e-15	43	99	2	60	HAPB protein
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015055541.1	1e-161	nuclear transcription factor Y subunit A-2-like isoform X1
Refseq	XP_027767866.1	1e-161	nuclear transcription factor Y subunit A-2-like isoform X1
Refseq	XP_027767867.1	1e-160	nuclear transcription factor Y subunit A-2-like isoform X2
TrEMBL	M1CQ29	1e-119	M1CQ29_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400072322	1e-120	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3706	23	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05690.1	6e-34	nuclear factor Y, subunit A2