PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g031820.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 318aa    MW: 36408.7 Da    PI: 6.3224
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g031820.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-1663108147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg W + Ed +l+++v q+G+ +W++Ia+++  gR++k+c++rw++ 
  Sopen10g031820.1  63 RGHWRPHEDAKLKELVGQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 108
                       899*****************************.***********996 PP
2Myb_DNA-binding58.21.9e-18115158146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r+++++eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+ 
  Sopen10g031820.1 115 RKAFSEEEEERLLSAHKMYGNK-WSMIARLFP-GRTDNAVKNHWHV 158
                       789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5958109IPR017930Myb domain
SMARTSM007175.8E-1462111IPR001005SANT/Myb domain
PfamPF002494.9E-1563108IPR001005SANT/Myb domain
SuperFamilySSF466893.32E-2863156IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-2664116IPR009057Homeodomain-like
CDDcd001672.97E-1266107No hitNo description
PROSITE profilePS5129426.315110164IPR017930Myb domain
SMARTSM007173.0E-15114162IPR001005SANT/Myb domain
PfamPF002494.3E-15115157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-21117163IPR009057Homeodomain-like
CDDcd001675.29E-7126157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MNSSVGSCYV QKMNFLVPCV EENPWRLHQM ENKFKDEEEG LVDLIGIKDT NHNINGGTKL  60
CARGHWRPHE DAKLKELVGQ YGPQNWNLIA EKLEGRSGKS CRLRWFNQLD PRINRKAFSE  120
EEEERLLSAH KMYGNKWSMI ARLFPGRTDN AVKNHWHVIM ARKHREQNSV YRRRKTSNLQ  180
QIIAPNNNNN NDDDNDVIIQ SDSTISSNIV DDLQSDSTCT NLSLTPSSSK AIIHPFLMTR  240
FNHHHVEHQG IIDPNKGLSR DEEEVKMGLY GNMSDTNSEI SASESVANNM TNIVKIYEED  300
EDDIKTVNFI DFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32621636107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055263.10.0transcription factor MYB54
SwissprotQ5NBM89e-74CSA_ORYSJ; Transcription factor CSA
TrEMBLK4D3190.0K4D319_SOLLC; Uncharacterized protein
STRINGSolyc10g081320.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.18e-73myb domain protein 105
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]