PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen10g031190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 359aa MW: 40641.8 Da PI: 4.8591 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.2 | 1.5e-16 | 30 | 78 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +g+W AeI+d + ++ r +lg++ taeeAa+a+++a+ l+g Sopen10g031190.1 30 FVGVRQRP-SGKWIAEIKDTT---QKIRMWLGTYETAEEAARAYDQAAVLLRG 78 78******.7*********32...35**********************98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.48 | 29 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.5E-33 | 29 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-26 | 29 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-19 | 30 | 86 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.3E-11 | 30 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.46E-28 | 30 | 85 | No hit | No description |
PRINTS | PR00367 | 1.6E-7 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-7 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MEINFQKHQQ TEAISTKFKG RKRSKGPNSF VGVRQRPSGK WIAEIKDTTQ KIRMWLGTYE 60 TAEEAARAYD QAAVLLRGSN TRTNFLTTRV SHDSPLASRI RNLLNIKKIA KEKSLDYSPD 120 STSNSSSTTN PISSENAENS NLYEKLLSYD HESQFFDSNS VQSNTTSVTS LNTSNFSDPM 180 SSENAKNSYI YETMLSYDNN SIIPRVESGE DSAYTDITPM LGGREIVSNN RDTVLSCDRE 240 NQLIFDSNSV RSGSNNINNC DDPISIENSK RCNLYETCYN NILGVIPRDQ ESRVFDDFKA 300 DLDISTSSLS WDLEELLDIP LTEFEVMKVE RQISASLYAV NGVQDYMQII HHHPLSYSW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 19 | 25 | GRKRSKG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015055078.1 | 0.0 | ethylene-responsive transcription factor ERN2-like | ||||
TrEMBL | A0A2G2VVM7 | 1e-107 | A0A2G2VVM7_CAPBA; Ethylene-responsive transcription factor RAP2-11 | ||||
TrEMBL | A0A2G2YNM1 | 1e-107 | A0A2G2YNM1_CAPAN; Ethylene-responsive transcription factor RAP2-11 | ||||
TrEMBL | A0A2G3BH19 | 1e-107 | A0A2G3BH19_CAPCH; Uncharacterized protein | ||||
STRING | Solyc10g080650.1.1 | 1e-112 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2018 | 22 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-23 | related to AP2 11 |