PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g031190.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 359aa    MW: 40641.8 Da    PI: 4.8591
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g031190.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-163078355
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      + GVr+++ +g+W AeI+d +   ++ r +lg++ taeeAa+a+++a+  l+g
  Sopen10g031190.1 30 FVGVRQRP-SGKWIAEIKDTT---QKIRMWLGTYETAEEAARAYDQAAVLLRG 78
                      78******.7*********32...35**********************98887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.482986IPR001471AP2/ERF domain
SMARTSM003804.5E-332992IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-262986IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-193086IPR016177DNA-binding domain
PfamPF008473.3E-113074IPR001471AP2/ERF domain
CDDcd000181.46E-283085No hitNo description
PRINTSPR003671.6E-73041IPR001471AP2/ERF domain
PRINTSPR003671.6E-75268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEINFQKHQQ TEAISTKFKG RKRSKGPNSF VGVRQRPSGK WIAEIKDTTQ KIRMWLGTYE  60
TAEEAARAYD QAAVLLRGSN TRTNFLTTRV SHDSPLASRI RNLLNIKKIA KEKSLDYSPD  120
STSNSSSTTN PISSENAENS NLYEKLLSYD HESQFFDSNS VQSNTTSVTS LNTSNFSDPM  180
SSENAKNSYI YETMLSYDNN SIIPRVESGE DSAYTDITPM LGGREIVSNN RDTVLSCDRE  240
NQLIFDSNSV RSGSNNINNC DDPISIENSK RCNLYETCYN NILGVIPRDQ ESRVFDDFKA  300
DLDISTSSLS WDLEELLDIP LTEFEVMKVE RQISASLYAV NGVQDYMQII HHHPLSYSW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11925GRKRSKG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055078.10.0ethylene-responsive transcription factor ERN2-like
TrEMBLA0A2G2VVM71e-107A0A2G2VVM7_CAPBA; Ethylene-responsive transcription factor RAP2-11
TrEMBLA0A2G2YNM11e-107A0A2G2YNM1_CAPAN; Ethylene-responsive transcription factor RAP2-11
TrEMBLA0A2G3BH191e-107A0A2G3BH19_CAPCH; Uncharacterized protein
STRINGSolyc10g080650.1.11e-112(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-23related to AP2 11