PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g031080.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 358aa    MW: 40176.4 Da    PI: 8.3537
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g031080.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.2e-18198252256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ ++tkeq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Sopen10g031080.1 198 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 252
                       788899***********************************************98 PP
2HD-ZIP_I/II127.75e-41198287191
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       +kk+rl+keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eLr +l
  Sopen10g031080.1 198 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTEENKRLHKELQELR-AL 287
                       69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.232194254IPR001356Homeobox domain
SuperFamilySSF466892.05E-18195263IPR009057Homeodomain-like
SMARTSM003896.9E-16196258IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-17198252IPR009057Homeodomain-like
CDDcd000865.17E-15198255No hitNo description
PfamPF000461.8E-15198252IPR001356Homeobox domain
PROSITE patternPS000270229252IPR017970Homeobox, conserved site
SMARTSM003406.1E-25254297IPR003106Leucine zipper, homeobox-associated
PfamPF021834.7E-10254288IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MELALSLGGD NTPKPILFLE KSSSSSSSLH ENKVNKDVGF CMVLGKSCNE VEDEVGRKKR  60
SKNHQEIRSS SIDPSLQLDL IPFSHGVSNN TCSKLSFPWL SQNLATHEPA GLTNGPALDM  120
TNRMQLVVAE EAEEGAALSS PNSEISNFQM NFPIYRNGKL INMKRDQCER DRDNNRWGNG  180
NNYSCSRISD EELDASARKK LRLTKEQSAF LEESFKEHNT LNPKQKLALA KQLNLRPRQV  240
EVWFQNRRAR TKLKQTEVDC EYLKKCCETL TEENKRLHKE LQELRALKSS QPFYMQLPAT  300
TLTMCPSCER VATTTSVTTT TTTTTPATTT TTTVAASNAV ALHNHKLISV MTKLECTN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246254RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089522.10.0homeobox-leucine zipper protein HOX11-like isoform X1
SwissprotP466652e-88HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A3Q7JFH00.0A0A3Q7JFH0_SOLLC; Uncharacterized protein
STRINGSolyc10g080540.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.17e-70homeobox from Arabidopsis thaliana