PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g030870.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 317aa    MW: 35878.9 Da    PI: 7.8861
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g030870.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31e-192978255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  Sopen10g030870.1 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 78
                      69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.10E-312887No hitNo description
SuperFamilySSF541714.18E-212987IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-302987IPR001471AP2/ERF domain
PfamPF008473.0E-132978IPR001471AP2/ERF domain
PROSITE profilePS5103222.552986IPR001471AP2/ERF domain
SMARTSM003804.4E-352992IPR001471AP2/ERF domain
PRINTSPR003672.7E-103041IPR001471AP2/ERF domain
PRINTSPR003672.7E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDSYKRNPLK PWKKGPARGK GGPQNALCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA  60
TAEEAAMAYD EAARRLYGPE AYLNLPHMRA NFNPLNKSQK FKWFSSTNNF VSSLIPNTTG  120
LLNLSAQPNV HVIHQRLQEL KRAEAAAATA AAAAASSSSS SITNIPKNET QKYSKLQPEY  180
LTMTSPHVMI KEKEDEFSSH NNVAIRGDQA EKPQIDLNEF LQQIGILKRD DHHQQQQPDK  240
NQDHDHNNNS ISSFTESRVS LKDDSSIAHL FGDTTSYNWD TLGSITGIED HEVAAEEANS  300
FYKVNDELMF PSSIWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-173086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015056203.10.0dehydration-responsive element-binding protein 2F
TrEMBLM1C6S80.0M1C6S8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000609700.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70982329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.14e-60ERF family protein