PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen10g030640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 229aa MW: 25726.3 Da PI: 7.5036 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.2 | 7.8e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien s rqvtfskRr+g++KKAeELSvLCdae+ vi+fs+t++ly ++s Sopen10g030640.1 9 KKIENISSRQVTFSKRRAGLFKKAEELSVLCDAEIGVIVFSNTDRLYKFAS 59 68***********************************************86 PP | |||||||
2 | K-box | 54.7 | 4.2e-19 | 85 | 158 | 15 | 88 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 + + el+ Lk+e+ +L++ +++G++L+ L++keLqqLe+qL +++ ++++kK+++lle +e++ + +el Sopen10g030640.1 85 NVVKPELNSLKAEVAKLRKATGRMMGKELDGLDFKELQQLEHQLTEGILSVKNKKEQVLLELLEKSNLQIEELG 158 456789*******************************************************9999887777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.6E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.964 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.84E-40 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 2.22E-30 | 2 | 87 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.293 | 84 | 175 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.4E-13 | 84 | 157 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MGRGKIEMKK IENISSRQVT FSKRRAGLFK KAEELSVLCD AEIGVIVFSN TDRLYKFASS 60 KSSMEKIVER YNNSSHSSEH PIVENVVKPE LNSLKAEVAK LRKATGRMMG KELDGLDFKE 120 LQQLEHQLTE GILSVKNKKE QVLLELLEKS NLQIEELGHK SCNHYPENYE AARKNSGGNT 180 TVICDFKSVE EENSDTSLSL GLSVATSQKK KNPKIECTSN DSENLMILD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-19 | 1 | 90 | 1 | 92 | MEF2C |
5f28_B | 7e-19 | 1 | 90 | 1 | 92 | MEF2C |
5f28_C | 7e-19 | 1 | 90 | 1 | 92 | MEF2C |
5f28_D | 7e-19 | 1 | 90 | 1 | 92 | MEF2C |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 1e-100 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015055410.1 | 1e-166 | MADS-box transcription factor 23 | ||||
TrEMBL | A0A3Q7JFA2 | 1e-160 | A0A3Q7JFA2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g080030.1.1 | 1e-160 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57390.1 | 2e-41 | AGAMOUS-like 18 |