PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g029870.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 373aa    MW: 42330 Da    PI: 4.2851
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g029870.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.42.8e-19101263128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevl 93 
                        G+rF+Ptde+l+ +yL k v +k+  + + i+  ++y + +P +L    + +++  yfF+k +k+    +r +r  +  g Wk + k k++ 
  Sopen10g029870.1  10 LGVRFRPTDEQLI-RYLIKFVVSKNYVC-NDIEFEELYGSkKPGELL---EDSSDTKYFFTKLKKRD---TRFSRtLVGGGSWKGKSKGKSIG 94 
                       69***********.99*****9999888.5588888887658****6...3455678****998865...68888667899***999999997 PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +   +++g+k+t  + ++++ + +  +W+m+ey+l
  Sopen10g029870.1  95 A---KKIGIKRTYNYEENKKDEVNDVSWIMKEYSL 126
                       7...88***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-185153IPR003441NAC domain
PROSITE profilePS5100523.7028153IPR003441NAC domain
PfamPF023654.6E-1511126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MAIESPDAEL GVRFRPTDEQ LIRYLIKFVV SKNYVCNDIE FEELYGSKKP GELLEDSSDT  60
KYFFTKLKKR DTRFSRTLVG GGSWKGKSKG KSIGAKKIGI KRTYNYEENK KDEVNDVSWI  120
MKEYSLDDKV IKLLSNRGVM KHKDVVLCYI RCKVKKSRDH MPTTTVSEND DDTQPQGPIY  180
ISELGNHMPT TTVSGNDDDD GDGDDTLVPQ GPNEFGYGDQ FPQQIVKPMQ NIGSGYVGCD  240
DTLPQGPNEF GYGDQFPQQI VKPMQNIESG YVGCDDENRN DMTTQPQWPM DDHQLIVTFP  300
MVQGNDAAMN EGNMNGELVF PYQEEQVLQN VEETAGNDYQ VEPTNNDEYL LDELSDFDKF  360
MGQNPEWLSQ LLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010312399.10.0NAC domain-containing protein 105
TrEMBLB1N6660.0B1N666_SOLLC; Uncharacterized protein
STRINGSolyc10g079220.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1421348